Basic Information
Locus ID:
Sbi_jg33241
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 111871043 | 111877052 | + | Sbi_jg33241 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 34,925.51 Da | 52.82 | 70.55 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 241 | 305 | 8.3E-9 | IPR000719 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 104 | 145 | 2.5E-7 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 94 | 146 | 1.39E-7 | IPR016197 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 34 | 99 | 1.78E-9 | IPR043502 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 215 | 305 | 7.44E-19 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 271 | 306 | 3.2E-7 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 235 | 270 | 4.8E-8 | - |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 50 | 137 | 8.7E-8 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 241 | 311 | 11.538304 | IPR000719 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 100 | 142 | 8.702201 | IPR000953 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 247 | 270 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50240.2 | Protein kinase family protein with ARM repeat domain. The FUSED (FU) gene belongs to Ser/Thr protein kinase family and has a key role in the hedgehog signaling pathway known to control cell proliferation and patterning in fruit flies and humans . Arabidopsis thaliana genome has a single Fu gene. Cytokinesis-defective mutants, which we named two-in-one (tio), result from mutations in Arabidopsis Fu. Phenotypic analysis of tio mutants reveals an essential role for TIO in conventional modes of cytokinesis in plant meristems and during male gametogenesis. TIO is tightly localized to the midline of the nascent phragmoplast and remains associated with the expanding phragmoplast ring. This gene was previously annotated as two gene models, AT1G50230.1 and AT1G50240.1, however the experimental evidence exists (Oh et al, Current Biology, 2005) showing that these two models are in fact single gene, named FUSED. | 0 |
| RefSeq | XP_030487647.1 | serine/threonine-protein kinase TIO [Cannabis sativa] | 0 |
| Q2QAV0 | Serine/threonine-protein kinase TIO OS=Arabidopsis thaliana OX=3702 GN=TIO PE=1 SV=1 | 0 | |
| TrEMBL | A0A699QX53 | non-specific serine/threonine protein kinase (Fragment) OS=Tanacetum cinerariifolium OX=118510 GN=Tci_850390 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 38 | Sbi_jg11007, Sbi_jg11359, Sbi_jg11360, Sbi_jg13582 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15426, Seu_jg18148 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g06310 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_16_RagTag.678, evm.TU.Scaffold_3_RagTag.1025 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21800 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1437 |