Basic Information
Locus ID:
Sbi_jg32938
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 97299214 | 97310000 | + | Sbi_jg32938 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 131,224.80 Da | 54.62 | 89.66 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 116 | 545 | 1.09E-35 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 102 | 550 | 9.6E-48 | IPR011989 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.2 | - | 0 |
| RefSeq | XP_021751622.1 | E3 ubiquitin-protein ligase UPL4-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0J8B6J2 | HECT-type E3 ubiquitin transferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_007490 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology