Basic Information
Locus ID:
Sbi_jg3290
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Sec12-like protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000021l | 30309480 | 30316791 | - | Sbi_jg3290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 42,621.90 Da | 33.52 | 90.64 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 149 | 228 | 5.4E-6 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 84 | 345 | 2.93E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 10 | 352 | 2.1E-61 | IPR015943 |
| SMART | SM00320 | WD40_4 | 306 | 346 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 170 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 177 | 212 | 5.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 303 | 80.0 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021755153.1 | SEC12-like protein 2 [Chenopodium quinoa] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A803M4G0 | ANAPC4_WD40 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology