Basic Information
Locus ID:
Sbi_jg3268
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000021l | 29641528 | 29650903 | + | Sbi_jg3268 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.70 | 169,804.19 Da | 37.40 | 105.82 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 629 | 833 | 5.99615E-108 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 941 | 1235 | 1.12325E-87 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 315 | 603 | 7.66949E-101 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1258 | 1478 | 1.33514E-122 | - |
| Pfam | PF00005 | ABC transporter | 1277 | 1425 | 2.2E-28 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 317 | 581 | 1.8E-25 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 651 | 785 | 5.5E-20 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 953 | 1187 | 5.7E-27 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 305 | 603 | 3.01E-33 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 941 | 1242 | 2.22E-46 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 635 | 849 | 1.27E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1251 | 1489 | 1.11E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1243 | 1495 | 2.9E-80 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 905 | 1241 | 6.2E-51 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 643 | 873 | 3.9E-69 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 284 | 613 | 1.1E-48 | IPR036640 |
| SMART | SM00382 | AAA_5 | 660 | 833 | 6.0E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1286 | 1478 | 1.4E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 943 | 1223 | 30.329233 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 626 | 856 | 21.662109 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 319 | 595 | 34.436256 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1262 | 1494 | 16.766844 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 758 | 772 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 879 | 898 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 879 | 908 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_021853038.1 | putative ABC transporter C family member 15 [Spinacia oleracea] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LIL0 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology