Basic Information
Locus ID:
Sbi_jg32126
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
11S globulin seed storage protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 46271584 | 46286854 | - | Sbi_jg32126 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 39,626.27 Da | 44.54 | 95.32 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 203 | 359 | 3.59453E-64 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 5 | 169 | 4.38626E-48 | - |
| Pfam | PF00190 | Cupin | 10 | 160 | 8.5E-17 | IPR006045 |
| Pfam | PF00190 | Cupin | 206 | 341 | 3.3E-14 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 8 | 351 | 7.76E-35 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 13 | 183 | 2.2E-26 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 198 | 361 | 9.9E-42 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 194 | 345 | 1.7E-11 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 7 | 161 | 3.3E-18 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 300 | 318 | 9.8E-7 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 264 | 280 | 9.8E-7 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 282 | 297 | 9.8E-7 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 322 | 339 | 9.8E-7 | IPR006044 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_010678486.1 | cocosin 1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9R739 | Cupin type-1 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_098950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology