Basic Information
Locus ID:
Sbi_jg31813
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 31426387 | 31431355 | - | Sbi_jg31813 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 127,103.01 Da | 47.59 | 55.22 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 540 | 856 | 8.91636E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 686 | 722 | 0.007 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 643 | 680 | 1.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 542 | 573 | 4.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 822 | 856 | 5.6E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 537 | 859 | 4.89E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 454 | 623 | 2.8E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 634 | 880 | 8.3E-52 | IPR015943 |
| SMART | SM00320 | WD40_4 | 778 | 814 | 3.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 641 | 680 | 4.5E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 683 | 722 | 2.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 724 | 763 | 4.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 815 | 856 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 535 | 574 | 6.7E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 689 | 723 | 10.521959 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 648 | 683 | 12.288313 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 833 | 856 | 9.840087 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 542 | 583 | 13.68318 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 648 | 689 | 15.521181 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 689 | 723 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 542 | 576 | 11.312864 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 667 | 681 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 561 | 575 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 709 | 723 | 3.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 561 | 575 | 3.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 667 | 681 | 3.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 896 | 1066 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1050 | 1066 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 930 | 944 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 976 | 1032 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 904 | 921 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 954 | 969 | - | - |
| Coils | Coil | Coil | 286 | 306 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021854625.1 | uncharacterized protein LOC110793990 [Spinacia oleracea] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8CGL2 | WD_REPEATS_REGION domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g110220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology