Basic Information
Locus ID:
Sbi_jg31722
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 26979180 | 26980761 | - | Sbi_jg31722 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 34,398.43 Da | 44.47 | 90.06 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 267 | 307 | 2.2E-7 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 78 | 1.7E-8 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 270 | 309 | 2.27E-8 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 79 | 200 | 1.48E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 112 | 207 | 1.4E-7 | IPR011990 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 93 | 4.2E-5 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 259 | 312 | 9.2E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 265 | 307 | 11.110068 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_021847550.1 | F-box protein At1g67340-like [Spinacia oleracea] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9AF49 | MYND-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology