Basic Information
Locus ID:
Sbi_jg3153
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000021l | 25795501 | 25802522 | - | Sbi_jg3153 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.93 | 133,223.69 Da | 35.60 | 82.02 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 623 | 753 | 2.26787E-47 | IPR033734 |
| CDD | cd09612 | Jacalin | 867 | 996 | 7.56663E-40 | IPR033734 |
| CDD | cd09612 | Jacalin | 1067 | 1194 | 2.81718E-44 | IPR033734 |
| Pfam | PF01535 | PPR repeat | 249 | 276 | 0.027 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 285 | 312 | 0.068 | IPR002885 |
| Pfam | PF01419 | Jacalin-like lectin domain | 623 | 754 | 4.0E-31 | IPR001229 |
| Pfam | PF13041 | PPR repeat family | 145 | 192 | 6.7E-9 | IPR002885 |
| Pfam | PF01419 | Jacalin-like lectin domain | 1064 | 1194 | 3.1E-31 | IPR001229 |
| Pfam | PF13041 | PPR repeat family | 74 | 113 | 4.0E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 322 | 346 | 0.41 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 221 | 248 | 0.0042 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 421 | 540 | 4.7E-19 | IPR032867 |
| Pfam | PF01419 | Jacalin-like lectin domain | 867 | 996 | 8.4E-27 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 856 | 995 | 5.49E-36 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 1053 | 1193 | 1.06E-41 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 612 | 754 | 1.96E-43 | IPR036404 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 265 | 394 | 5.6E-18 | IPR011990 |
| Gene3D | G3DSA:2.100.10.30 | - | 601 | 752 | 6.5E-55 | IPR036404 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1 | 136 | 9.6E-33 | IPR011990 |
| Gene3D | G3DSA:2.100.10.30 | - | 1047 | 1194 | 7.3E-52 | IPR036404 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 137 | 210 | 6.2E-9 | IPR011990 |
| Gene3D | G3DSA:2.100.10.30 | - | 847 | 996 | 4.4E-46 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 1064 | 1195 | 7.4E-43 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 623 | 754 | 1.3E-41 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 867 | 997 | 2.6E-33 | IPR001229 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 285 | 317 | 0.0015 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 77 | 111 | 2.3E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 112 | 146 | 7.2E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 49 | 76 | 3.4E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 149 | 181 | 4.4E-7 | IPR002885 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 612 | 754 | 53.337448 | IPR001229 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 247 | 281 | 9.613118 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 110 | 144 | 11.4875 | IPR002885 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 856 | 997 | 44.023903 | IPR001229 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 44 | 74 | 8.999285 | IPR002885 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 1053 | 1195 | 52.183807 | IPR001229 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 75 | 109 | 11.509422 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 146 | 180 | 12.276713 | IPR002885 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.3 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_021759624.1 | uncharacterized protein LOC110724509 [Chenopodium quinoa] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LKG9 | DYW_deaminase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology