Basic Information
Locus ID:
Sbi_jg3146
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000021l | 25656117 | 25660201 | + | Sbi_jg3146 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 59,200.35 Da | 29.34 | 72.27 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 370 | 478 | 5.1649E-27 | IPR033734 |
| CDD | cd09612 | Jacalin | 187 | 318 | 1.18451E-38 | IPR033734 |
| CDD | cd09612 | Jacalin | 22 | 152 | 8.39582E-46 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 368 | 476 | 1.3E-19 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 22 | 152 | 1.0E-36 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 187 | 318 | 2.3E-29 | IPR001229 |
| Pfam | PF06839 | GRF zinc finger | 490 | 522 | 3.1E-8 | IPR010666 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 177 | 317 | 7.2E-39 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 355 | 477 | 7.85E-31 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 11 | 151 | 1.96E-43 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 170 | 317 | 7.8E-47 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 352 | 481 | 1.2E-37 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 2 | 152 | 8.8E-51 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 187 | 319 | 1.9E-36 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 368 | 487 | 2.3E-21 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 22 | 153 | 1.5E-39 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 11 | 153 | 52.240082 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 357 | 500 | 27.769753 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 176 | 319 | 47.83186 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_021851045.1 | jacalin-related lectin 3-like [Spinacia oleracea] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R5P4 | Jacalin-type lectin domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_109120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology