Basic Information
Locus ID:
Sbi_jg31290
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 14214394 | 14215214 | + | Sbi_jg31290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 26,835.09 Da | 68.06 | 92.51 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 21 | 58 | 4.8E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 56 | 2.62E-9 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 61 | 101 | 6.02E-5 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 57 | 3.1E-6 | - |
| SMART | SM00256 | fbox_2 | 23 | 63 | 0.0052 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 17 | 53 | 9.470975 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18150.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_016177100.1 | F-box/LRR-repeat protein At3g26922-like [Arachis ipaensis] | 0 |
| Q9LV26 | Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana OX=3702 GN=At3g18150 PE=4 SV=2 | 0 | |
| TrEMBL | A0A803LTB6 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31290, Sbi_jg57981 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25612 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl04353, Sgl09422 |