Basic Information
Locus ID:
Sbi_jg31225
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 12784720 | 12788629 | + | Sbi_jg31225 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 46,486.79 Da | 46.38 | 74.83 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 70 | 383 | 5.0E-86 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 24 | 417 | 3.14E-124 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 16 | 416 | 2.2E-119 | IPR012334 |
| SMART | SM00710 | pbh1 | 306 | 327 | 3200.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 224 | 245 | 480.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 247 | 267 | 2800.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 277 | 298 | 5400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 197 | 223 | 240.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 254 | 267 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_010679447.1 | polygalacturonase At1g48100 [Beta vulgaris subsp. vulgaris] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M7B2 | Polygalacturonase At1g80170 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology