halophFGD

Basic Information

Locus ID: Sbi_jg31101

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: 11S globulin seed storage protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000017l	10447387	10453385	+	Sbi_jg31101

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.37	38,943.03 Da	43.82	95.84	-0.16

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd02242	cupin_11S_legumin_N	3	166	3.1787E-54	-
CDD	cd02243	cupin_11S_legumin_C	199	356	4.56133E-61	-
Pfam	PF00190	Cupin	9	157	1.9E-17	IPR006045
Pfam	PF00190	Cupin	203	339	1.8E-15	IPR006045
SUPERFAMILY	SSF51182	RmlC-like cupins	10	349	1.12E-36	IPR011051
Gene3D	G3DSA:2.60.120.10	Jelly Rolls	9	179	3.8E-32	IPR014710
Gene3D	G3DSA:2.60.120.10	Jelly Rolls	195	358	6.1E-41	IPR014710
SMART	SM00835	Cupin_1_3	191	342	3.9E-19	IPR006045
SMART	SM00835	Cupin_1_3	1	158	9.0E-21	IPR006045
PRINTS	PR00439	11-S seed storage protein family signature	319	336	5.5E-8	IPR006044
PRINTS	PR00439	11-S seed storage protein family signature	279	294	5.5E-8	IPR006044
PRINTS	PR00439	11-S seed storage protein family signature	261	277	5.5E-8	IPR006044
PRINTS	PR00439	11-S seed storage protein family signature	297	315	5.5E-8	IPR006044

Gene Ontology

Molecular Function:

GO:0045735 (nutrient reservoir activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G28680.1	RmlC-like cupins superfamily protein.
RefSeq	XP_010678486.1	cocosin 1 isoform X1 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	A9NJG2	13S globulin seed storage protein OS=Fagopyrum tataricum OX=62330 PE=1 SV=1
TrEMBL	A0A0K9R739	Cupin type-1 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_098950 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg27790, jg35797, jg8320, jg9306, jg9307
Aizoaceae	Mesembryanthemum crystallinum	2	gene_20262, gene_7039
Amaranthaceae	Atriplex hortensis	5	Ah000823, Ah000824, Ah019434, Ah028102, Ah031039
Amaranthaceae	Beta vulgaris	4	BVRB_5g114420, BVRB_7g159780, BVRB_7g174610, BVRB_7g174620
Amaranthaceae	Salicornia bigelovii	12	Sbi_jg24244, Sbi_jg24255, Sbi_jg27353, Sbi_jg27521 ... Sbi_jg31101, Sbi_jg32126, Sbi_jg33048, Sbi_jg33049, Sbi_jg33098, Sbi_jg8069, Sbi_jg8082, Sbi_jg8084
Amaranthaceae	Salicornia europaea	8	Seu_jg11940, Seu_jg11953, Seu_jg24990, Seu_jg24991 ... Seu_jg25789, Seu_jg25790, Seu_jg7821, Seu_jg7850
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00004650, GOSA_00004651, GOSA_00004652, GOSA_00004653 ... GOSA_00012234, GOSA_00023600
Amaranthaceae	Suaeda glauca	7	Sgl24738, Sgl29889, Sgl34918, Sgl40317, Sgl54719, Sgl71468 ... Sgl75054
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000007073, gene:ENSEOMG00000007510 ... gene:ENSEOMG00000013140, gene:ENSEOMG00000021325, gene:ENSEOMG00000031676, gene:ENSEOMG00000036572, gene:ENSEOMG00000038097, gene:ENSEOMG00000040166, gene:ENSEOMG00000043874, gene:ENSEOMG00000048419
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.1BG0003320, CQ.Regalona.r1.3AG0010140 ... CQ.Regalona.r1.3BG0010270, CQ.Regalona.r1.5AG0020410, CQ.Regalona.r1.5BG0021830, CQ.Regalona.r1.7AG0002170, CQ.Regalona.r1.7AG0020230, CQ.Regalona.r1.7BG0022800, CQ.Regalona.r1.9BG0003520
Anacardiaceae	Pistacia vera	1	pistato.v30059740
Apiaceae	Apium graveolens	4	Ag10G01049, Ag1G00051, AgUnG01170, AgUnG01171
Arecaceae	Cocos nucifera	2	COCNU_04G014920, scaffold011975G000040
Arecaceae	Phoenix dactylifera	2	gene-LOC103710574, gene-LOC103718026
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.1045.V1.1
Asteraceae	Flaveria trinervia	3	Ftri12G29425, Ftri14G13482, Ftri14G27146
Brassicaceae	Arabidopsis thaliana	2	AT1G07750.1, AT2G28680.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10008034m.g.v1.0, Thhalv10016860m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g02870.v2.2, Sp4g11550.v2.2
Brassicaceae	Brassica nigra	5	BniB01g015210.2N, BniB02g003750.2N, BniB03g002370.2N ... BniB06g017830.2N, BniB06g042950.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq07G1576, Ceq08G2268, Ceq08G2269, Ceq08G2288
Casuarinaceae	Casuarina glauca	9	Cgl07G1674, Cgl07G1676, Cgl07G1683, Cgl07G1687, Cgl07G1691 ... Cgl07G1692, Cgl08G2446, Cgl08G2447, Cgl08G2460
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g15640
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g33550, gene.Thate02g38740
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG08.737, evm.TU.LG08.738, evm.TU.LG09.1341
Plantaginaceae	Plantago ovata	3	Pov_00027084, Pov_00039974, Pov_00039975
Plumbaginaceae	Limonium bicolor	3	Lb2G13921, Lb8G36507, Lb8G36508
Poaceae	Echinochloa crus-galli	8	AH03.3887, AH04.515, AH05.965, BH03.4174, BH04.559, BH05.832 ... CH05.956, CH07.329
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_5AG0407480, gene-QOZ80_5BG0455770 ... gene-QOZ80_6AG0538920, gene-QOZ80_6BG0492240
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.1HG0008450.1, HORVU.MOREX.r3.3HG0328330.1 ... HORVU.MOREX.r3.3HG0329530.1, HORVU.MOREX.r3.3HG0329560.1, HORVU.MOREX.r3.7HG0748960.1, HORVU.MOREX.r3.7HG0748980.1
Poaceae	Lolium multiflorum	13	gene-QYE76_008915, gene-QYE76_008917, gene-QYE76_029140 ... gene-QYE76_030581, gene-QYE76_030582, gene-QYE76_057190, gene-QYE76_058470, gene-QYE76_058474, gene-QYE76_058476, gene-QYE76_058888, gene-QYE76_058898, gene-QYE76_062409, gene-QYE76_062900
Poaceae	Oryza coarctata	5	Oco01G031310, Oco02G032460, Oco09G000830, Oco10G000910 ... Oco17G011360
Poaceae	Oryza sativa	2	LOC_Os01g74480.1, LOC_Os05g02520.1
Poaceae	Paspalum vaginatum	2	gene-BS78_05G089700, gene-BS78_09G017700
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0105013, Pt_Chr0105019, Pt_Chr0108089, Pt_Chr0502227 ... Pt_Chr0502228, Pt_Chr0503647, Pt_Chr0503648, Pt_Chr0605857
Poaceae	Sporobolus alterniflorus	7	Chr01G013430, Chr01G013490, Chr06G004630, Chr10G007810 ... Chr12G023260, Chr12G023340, Chr15G006110
Poaceae	Thinopyrum elongatum	5	Tel1E01G096600, Tel1E01G601500, Tel3E01G887600 ... Tel3E01G897700, Tel7E01G951400
Poaceae	Triticum dicoccoides	14	gene_TRIDC1AG005310, gene_TRIDC1AG054290 ... gene_TRIDC1BG007350, gene_TRIDC1BG062090, gene_TRIDC3AG074430, gene_TRIDC3AG074470, gene_TRIDC3AG075210, gene_TRIDC3AG075220, gene_TRIDC3AG075240, gene_TRIDC3BG085750, gene_TRIDC3BG086580, gene_TRIDC3BG086610, gene_TRIDC7AG075990, gene_TRIDC7BG072680
Poaceae	Triticum aestivum	19	TraesCS1A02G045800.1, TraesCS1A02G369500.1 ... TraesCS1B02G059000.1, TraesCS1B02G388000.1.cds1, TraesCS1D02G046400.1, TraesCS1D02G375400.1, TraesCS3A02G526200.1.cds1, TraesCS3A02G526500.1, TraesCS3A02G531000.1, TraesCS3A02G531100.1, TraesCS3B02G593800.1, TraesCS3B02G601300.1, TraesCS3B02G601500.1, TraesCS3D02G531600.1, TraesCS3D02G536500.1, TraesCS7A02G545400.1, TraesCS7A02G545600.1, TraesCS7B02G468800.1, TraesCS7D02G531900.1
Poaceae	Zea mays	4	Zm00001eb132730_P001, Zm00001eb266290_P001 ... Zm00001eb355570_P001, Zm00001eb401380_P001
Poaceae	Zoysia japonica	4	nbis-gene-18340, nbis-gene-30499, nbis-gene-39261 ... nbis-gene-54062
Poaceae	Zoysia macrostachya	2	Zma_g27593, Zma_g30510
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.2280, evm.TU.LG03.2269, evm.TU.LG06.1098 ... evm.TU.LG11.416, evm.TU.LG14.1455, evm.TU.LG17.1315, evm.TU.LG18.170, evm.TU.LG26.899
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g34840, gene.Posoc10g01130
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_13_RagTag.803
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-15408, nbisL1-mrna-15409, nbisL1-mrna-15410 ... nbisL1-mrna-15411, nbisL1-mrna-15413, nbisL1-mrna-30231, nbisL1-mrna-30234
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000015l.466
Rhizophoraceae	Kandelia obovata	1	Maker00015895
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-4385
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-15004
Salicaceae	Populus euphratica	14	populus_peu00491, populus_peu00492, populus_peu00493 ... populus_peu00494, populus_peu00497, populus_peu00498, populus_peu00499, populus_peu00500, populus_peu00501, populus_peu00502, populus_peu00503, populus_peu06139, populus_peu06871, populus_peu23364
Solanaceae	Lycium barbarum	5	gene-LOC132598697, gene-LOC132599488, gene-LOC132643519 ... gene-LOC132643520, gene-LOC132643932
Solanaceae	Solanum chilense	5	SOLCI001725100, SOLCI001725200, SOLCI001749400 ... SOLCI002908300, SOLCI003037200
Solanaceae	Solanum pennellii	5	gene-LOC107003226, gene-LOC107004324, gene-LOC107006653 ... gene-LOC107027773, gene-LOC107028782
Tamaricaceae	Reaumuria soongarica	1	STRG.19490_chr07_-
Tamaricaceae	Tamarix chinensis	3	TC04G0189, TC04G0196, TC11G2248
Zosteraceae	Zostera marina	1	Zosma02g21280.v3.1