halophFGD

Basic Information

Locus ID: Sbi_jg31054

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: Zinc-finger of C2H2 type

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000017l	9842199	9852484	+	Sbi_jg31054

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.29	78,391.79 Da	52.53	61.75	-0.69

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12874	Zinc-finger of C2H2 type	621	645	7.8E-5	-
SUPERFAMILY	SSF57667	beta-beta-alpha zinc fingers	597	655	1.69E-8	IPR036236
Gene3D	G3DSA:3.30.160.60	Classic Zinc Finger	614	658	3.3E-8	-
PRINTS	PR01217	Proline rich extensin signature	413	434	7.2E-10	-
PRINTS	PR01217	Proline rich extensin signature	381	393	7.2E-10	-
PRINTS	PR01217	Proline rich extensin signature	344	356	7.2E-10	-
PRINTS	PR01217	Proline rich extensin signature	360	376	7.2E-10	-
PRINTS	PR01217	Proline rich extensin signature	534	559	7.2E-10	-
PRINTS	PR01217	Proline rich extensin signature	576	588	7.2E-10	-
MobiDBLite	mobidb-lite	consensus disorder prediction	345	389	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	578	592	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	311	389	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	593	611	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	311	337	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	401	426	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	534	614	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	401	427	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_021733909.1	zinc finger RNA-binding protein 2-like [Chenopodium quinoa]	0
TrEMBL	A0A0K9RI02	C2H2-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_064280 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Atriplex hortensis	3	Ah006594, Ah020201, Ah021231
Amaranthaceae	Salicornia bigelovii	130	Sbi_jg10182, Sbi_jg10288, Sbi_jg10290, Sbi_jg10359 ... Sbi_jg10360, Sbi_jg10361, Sbi_jg10575, Sbi_jg13553, Sbi_jg13556, Sbi_jg14290, Sbi_jg1460, Sbi_jg14855, Sbi_jg15011, Sbi_jg15023, Sbi_jg15413, Sbi_jg15457, Sbi_jg15893, Sbi_jg16040, Sbi_jg16182, Sbi_jg16785, Sbi_jg16786, Sbi_jg16840, Sbi_jg17016, Sbi_jg175, Sbi_jg17793, Sbi_jg18132, Sbi_jg18475, Sbi_jg18690, Sbi_jg19494, Sbi_jg19524, Sbi_jg20412, Sbi_jg20589, Sbi_jg20703, Sbi_jg20707, Sbi_jg20866, Sbi_jg21188, Sbi_jg21581, Sbi_jg21646, Sbi_jg22224, Sbi_jg23665, Sbi_jg25765, Sbi_jg25952, Sbi_jg2703, Sbi_jg27045, Sbi_jg27220, Sbi_jg27244, Sbi_jg27565, Sbi_jg27642, Sbi_jg28292, Sbi_jg28402, Sbi_jg28912, Sbi_jg29062, Sbi_jg29128, Sbi_jg29129, Sbi_jg29612, Sbi_jg29694, Sbi_jg2976, Sbi_jg31054, Sbi_jg32111, Sbi_jg32918, Sbi_jg33155, Sbi_jg33230, Sbi_jg35308, Sbi_jg35410, Sbi_jg36908, Sbi_jg36909, Sbi_jg37849, Sbi_jg37902, Sbi_jg38013, Sbi_jg38802, Sbi_jg38933, Sbi_jg39284, Sbi_jg39313, Sbi_jg39376, Sbi_jg39421, Sbi_jg39422, Sbi_jg41735, Sbi_jg41966, Sbi_jg42011, Sbi_jg42037, Sbi_jg42335, Sbi_jg43616, Sbi_jg44440, Sbi_jg4452, Sbi_jg448, Sbi_jg44832, Sbi_jg44838, Sbi_jg45108, Sbi_jg45119, Sbi_jg45165, Sbi_jg46020, Sbi_jg47119, Sbi_jg47250, Sbi_jg47354, Sbi_jg47839, Sbi_jg48914, Sbi_jg48954, Sbi_jg49967, Sbi_jg49988, Sbi_jg50368, Sbi_jg5039, Sbi_jg52013, Sbi_jg52408, Sbi_jg53067, Sbi_jg5423, Sbi_jg56580, Sbi_jg56756, Sbi_jg57163, Sbi_jg57857, Sbi_jg57858, Sbi_jg58821, Sbi_jg58869, Sbi_jg58930, Sbi_jg59459, Sbi_jg59647, Sbi_jg59652, Sbi_jg60832, Sbi_jg60861, Sbi_jg61079, Sbi_jg6156, Sbi_jg61937, Sbi_jg61938, Sbi_jg62693, Sbi_jg62968, Sbi_jg63113, Sbi_jg6350, Sbi_jg6494, Sbi_jg8798, Sbi_jg9988, Sbi_m1-g11809
Amaranthaceae	Salicornia europaea	2	Seu_jg3014, Seu_jg6387
Amaranthaceae	Suaeda aralocaspica	10	GOSA_00013683, GOSA_00016161, GOSA_00016589, GOSA_00016594 ... GOSA_00018560, GOSA_00018597, GOSA_00020584, GOSA_00024355, GOSA_00024818, GOSA_00029371