Basic Information
Locus ID:
Sbi_jg31050
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 9772946 | 9779464 | - | Sbi_jg31050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 17,435.46 Da | 39.25 | 71.99 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 86 | 156 | 1.55879E-31 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 154 | 4.8E-29 | IPR020189 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 15 | 93 | 1.15E-26 | IPR008991 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 86 | 156 | 3.6E-25 | IPR012340 |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 85 | 2.4E-42 | IPR014722 |
| Gene3D | G3DSA:2.40.50.140 | - | 86 | 160 | 6.6E-34 | - |
| SMART | SM01376 | eIF_5a_2 | 85 | 154 | 2.0E-33 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 22 | 153 | 2.1E-41 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 157 | 4.3E-66 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | - | IPR019769 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26630.1 | Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein. Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection. | 0 |
| RefSeq | XP_021864503.1 | eukaryotic translation initiation factor 5A-like [Spinacia oleracea] | 0 |
| Q9AXJ4 | Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QQ33 | Eukaryotic translation initiation factor 5A OS=Spinacia oleracea OX=3562 GN=SOVF_153970 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology