Basic Information
Locus ID:
Sbi_jg30805
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Short Name:
UBC27
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 5925267 | 5930854 | - | Sbi_jg30805 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 21,320.96 Da | 42.71 | 84.35 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 6 | 145 | 1.63432E-64 | IPR000608 |
| Pfam | PF00627 | UBA/TS-N domain | 157 | 190 | 2.7E-5 | IPR015940 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 6 | 142 | 4.3E-43 | IPR000608 |
| SUPERFAMILY | SSF46934 | UBA-like | 150 | 193 | 4.79E-8 | IPR009060 |
| SUPERFAMILY | SSF54495 | UBC-like | 5 | 150 | 2.17E-51 | IPR016135 |
| Gene3D | G3DSA:1.10.8.10 | - | 156 | 193 | 7.1E-7 | - |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 2 | 153 | 2.2E-56 | IPR016135 |
| SMART | SM00212 | ubc_7 | 5 | 150 | 1.0E-62 | - |
| SMART | SM00165 | uba_6 | 156 | 193 | 6.9E-7 | IPR015940 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 2 | 150 | 49.215714 | IPR000608 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 155 | 193 | 10.884193 | IPR015940 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 76 | 92 | - | IPR023313 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50870.1 | ubiquitin-conjugating enzyme 27. | 0 |
| RefSeq | XP_021775793.1 | ubiquitin-conjugating enzyme E2 27-like [Chenopodium quinoa] | 0 |
| Q9FI61 | Ubiquitin-conjugating enzyme E2 27 OS=Arabidopsis thaliana OX=3702 GN=UBC27 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RKL7 | E2 ubiquitin-conjugating enzyme OS=Spinacia oleracea OX=3562 GN=SOVF_062010 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg13401 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19784 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001620 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g113000 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30805, Sbi_jg58462 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28333 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004906, GOSA_00004907 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl53733, Sgl58997 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004306, gene:ENSEOMG00000024112 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0017630, CQ.Regalona.r1.5BG0018800 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30012330 |
| Apiaceae | Apium graveolens | 1 | Ag4G00009 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G009350 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715319 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1523.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri18G03097, Ftri1G31712, Ftri3G13043 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G50870.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014747m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g13010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g018350.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1977 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2138 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g05460 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0002s00027.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08820 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.588 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00033529 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27082 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4376, BH02.4409, CH02.4459 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0045030, gene-QOZ80_1BG0095060 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0311810.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057537 |
| Poaceae | Oryza coarctata | 2 | Oco01G028900, Oco02G030000 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g70140.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G388300, gene-BS78_K099300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0405455, Pt_Chr0600584, Pt_Chr0602602 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G002120, Chr03G023170, Chr05G032360, Chr08G018910 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G695200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG062180, gene_TRIDC3BG069760 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G439400.2, TraesCS3B02G473300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb363890_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10936, nbis-gene-28285 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11844, Zma_g9302 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2759, evm.TU.LG02.180, evm.TU.LG09.1419 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g13680 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1169, evm.TU.Scaffold_4_RagTag.320 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12365, nbisL1-mrna-12478 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18684, nbisL1-mrna-6922 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12744, nbisL1-mrna-1986 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.203, evm.TU.utg000010l.232 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000177, Maker00008542 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14704, nbisL1-mrna-633 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1325, nbisL1-mrna-8817 |
| Salicaceae | Populus euphratica | 2 | populus_peu28923, populus_peu30317 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021000 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15827_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0779 |
| Zosteraceae | Zostera marina | 1 | Zosma05g09430.v3.1 |