Basic Information
Locus ID:
Sbi_jg30726
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 4718579 | 4728350 | + | Sbi_jg30726 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 186,588.17 Da | 46.80 | 67.33 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 1068 | 1107 | 3.63309E-16 | - |
| Pfam | PF16135 | Tify domain binding domain | 990 | 1040 | 6.4E-19 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 1068 | 1110 | 1.8E-8 | IPR019787 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1254 | 1343 | 7.92E-5 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1058 | 1113 | 1.17E-15 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1056 | 1173 | 7.3E-20 | IPR013083 |
| SMART | SM00384 | AT_hook_2 | 329 | 341 | 8.5 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 589 | 599 | 54.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 448 | 460 | 21.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 522 | 534 | 0.9 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 680 | 692 | 24.0 | IPR017956 |
| SMART | SM00249 | PHD_3 | 1067 | 1108 | 6.5E-13 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 374 | 386 | 18.0 | IPR017956 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1065 | 1110 | 10.202 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1068 | 1107 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1491 | 1510 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1426 | 1517 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1531 | 1551 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 612 | 628 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 740 | 769 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 673 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1466 | 1490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 781 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1432 | 1459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 889 | 924 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 687 | 715 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 881 | 927 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 597 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 530 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36740.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_010679053.2 | uncharacterized protein LOC104894503 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RSQ4 | PHD-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_032500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology