Basic Information
Locus ID:
Sbi_jg3066
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000021l | 22113164 | 22116580 | + | Sbi_jg3066 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 123,854.83 Da | 38.51 | 104.67 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 413 | 472 | 2.4E-9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 652 | 712 | 4.5E-10 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 558 | 579 | 1.2 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 605 | 627 | 1.0 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 34 | 71 | 6.9E-10 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 168 | 229 | 2.5E-6 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 843 | 1111 | 1.0E-31 | IPR000719 |
| Pfam | PF13516 | Leucine Rich repeat | 628 | 642 | 0.34 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 827 | 1126 | 2.87E-63 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 79 | 402 | 1.57E-59 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 393 | 757 | 2.43E-71 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 478 | 754 | 7.8E-79 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 193 | 312 | 1.9E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 313 | 387 | 9.8E-14 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 388 | 477 | 4.1E-26 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 803 | 917 | 2.0E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 918 | 1122 | 1.0E-52 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 192 | 2.6E-41 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 168 | 190 | 95.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 216 | 240 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 363 | 387 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 531 | 551 | 60.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 627 | 651 | 16.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 264 | 287 | 5.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 459 | 483 | 20.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 675 | 698 | 57.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 411 | 434 | 300.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 121 | 145 | 60.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 841 | 1114 | 9.0E-28 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 555 | 578 | 35.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 699 | 723 | 34.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 579 | 603 | 7.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 435 | 458 | 290.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 97 | 120 | 43.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 841 | 1124 | 32.72517 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 701 | 723 | 7.165205 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 962 | 974 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 792 | 816 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 792 | 819 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36180.1 | Leucine-rich receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_021743828.1 | probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Chenopodium quinoa] | 0 |
| C0LGS2 | Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana OX=3702 GN=At4g36180 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LVB2 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg10570, jg11811, jg22717, jg39620 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1193, gene_24097 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah023528, Ah023529 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g004920, BVRB_1g004930 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg28869, Sbi_jg28870, Sbi_jg3064, Sbi_jg3066 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg6826, Seu_jg6827 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000901, GOSA_00000902 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl11648, Sgl11649, Sgl17145, Sgl17146, Sgl42930, Sgl47725 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000013148, gene:ENSEOMG00000015974 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0009360, CQ.Regalona.r1.1AG0009380 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30047320, pistato.v30209190 |
| Apiaceae | Apium graveolens | 3 | Ag4G02268, Ag5G00550, Ag9G00875 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G007550 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103699099 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.21.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G03886, Ftri18G22920 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G75640.1, AT4G36180.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10018033m.g.v1.0, Thhalv10024296m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g30750.v2.2, Sp7g33930.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g054270.2N, BniB05g002430.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G0213, Ceq06G0214 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl06G0228, Cgl06G0229, Cgl07G2568 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g04950 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g23630, gene.Thate08g19700 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-6568, nbisL1-mrna-6994, nbisL1-mrna-9951 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2451, evm.TU.LG06.660 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00014597, Pov_00030691, Pov_00038712 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06196 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0306680, gene-QOZ80_4BG0337680 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0186650.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_045673 |
| Poaceae | Oryza coarctata | 2 | Oco07G013720, Oco08G013220 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g48760.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G194900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0307266, Pt_Chr0307312 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G006050, Chr25G004990, Chr26G013560, Chr30G004800 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G694000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG057540, gene_TRIDC2BG060340 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G397200.1.cds1, TraesCS2B02G415500.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb073370_P001, Zm00001eb200690_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-22623 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20280 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.1527, evm.TU.LG04.1645, evm.TU.LG10.1240 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g08300, gene.Posoc07g04860 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.172, evm.TU.Scaffold_6_RagTag.2084 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17046, nbisL1-mrna-19012 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-20093, nbisL1-mrna-3312, nbisL1-mrna-9121 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11731, nbisL1-mrna-5929, nbisL1-mrna-6577 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000002l.221, add.evm.TU.utg000011l.529 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007223, Maker00012858 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-19387, nbisL1-mrna-20042, nbisL1-mrna-23053 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-2401, nbisL1-mrna-3028, nbisL1-mrna-9989 |
| Salicaceae | Populus euphratica | 3 | populus_peu15298, populus_peu23674, populus_peu32955 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132618396, gene-LOC132623831, gene-LOC132628089 |
| Solanaceae | Solanum chilense | 3 | SOLCI001963700, SOLCI006072300, SOLCI007131300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107008688, gene-LOC107012513, gene-LOC107015950 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16281 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0073 |
| Zosteraceae | Zostera marina | 1 | Zosma05g31540.v3.1 |