Basic Information
Locus ID:
Sbi_jg30495
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 1443747 | 1445000 | + | Sbi_jg30495 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 45,524.53 Da | 52.58 | 80.14 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 138 | 181 | 2.6144E-20 | - |
| Pfam | PF13639 | Ring finger domain | 138 | 181 | 1.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 118 | 184 | 4.8E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 188 | 3.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 139 | 180 | 1.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 139 | 181 | 12.326995 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021718972.1 | RING-H2 finger protein ATL47-like [Chenopodium quinoa] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L8Q5 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology