Basic Information
Locus ID:
Sbi_jg30420
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000017l | 257877 | 271007 | - | Sbi_jg30420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 139,861.92 Da | 57.21 | 79.35 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 604 | 750 | 1.95533E-18 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1113 | 1155 | 1.55209E-19 | - |
| CDD | cd12108 | Hr-like | 40 | 170 | 1.79904E-23 | - |
| Pfam | PF13639 | Ring finger domain | 1111 | 1154 | 5.2E-8 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 37 | 172 | 6.3E-9 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 604 | 751 | 3.3E-6 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1160 | 1217 | 1.6E-19 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 983 | 1058 | 4.0E-17 | IPR008913 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1049 | 1106 | 1.44E-16 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1104 | 1159 | 2.58E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1106 | 1157 | 1.9E-10 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 594 | 802 | 1.1E-19 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 294 | 442 | 2.2E-5 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1183 | 1219 | 9.3E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 36 | 189 | 1.3E-25 | - |
| SMART | SM00184 | ring_2 | 1113 | 1154 | 2.9E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1048 | 1112 | 27.267435 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 976 | 1045 | 24.006523 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1113 | 1155 | 11.648357 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_021733753.1 | zinc finger protein BRUTUS-like At1g18910 isoform X1 [Chenopodium quinoa] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RX52 | Zinc finger protein BRUTUS-like At1g18910 OS=Spinacia oleracea OX=3562 GN=SOVF_024830 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology