Basic Information
Locus ID:
Sbi_jg30242
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Short Name:
DXPS3
Description:
1-deoxy-D-xylulose-5-phosphate synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000027l | 9302896 | 9303555 | + | Sbi_jg30242 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.60 | 9,697.09 Da | 48.27 | 80.70 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07033 | TPP_PYR_DXS_TK_like | 3 | 73 | 1.00633E-29 | - |
| Pfam | PF02779 | Transketolase, pyrimidine binding domain | 2 | 74 | 1.0E-9 | IPR005475 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 2 | 74 | 2.63E-23 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 1 | 85 | 2.6E-21 | - |
KEGG Pathway
Pathway:
ko00730 (Thiamine metabolism)
map00730 (Thiamine metabolism)
ko00900 (Terpenoid backbone biosynthesis)
map00900 (Terpenoid backbone biosynthesis)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G11380.2 | 1-deoxy-D-xylulose 5-phosphate synthase 3. Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity. | 0 |
| RefSeq | XP_021867172.1 | probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic isoform X4 [Spinacia oleracea] | 0 |
| Q38854 | 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DXS PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QGT6 | 1-deoxy-D-xylulose-5-phosphate synthase OS=Spinacia oleracea OX=3562 GN=SOVF_181200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg30242 |
| Amaranthaceae | Suaeda glauca | 9 | Sgl04338, Sgl09407, Sgl27108, Sgl43201, Sgl47995, Sgl53505 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G627800 |
| Salicaceae | Populus euphratica | 1 | populus_peu12111 |