halophFGD

Basic Information

Locus ID: Sbi_jg29991

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: F-box kelch-repeat protein At3g23880-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000027l	5346061	5346549	-	Sbi_jg29991

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.29	18,610.34 Da	37.47	95.56	-0.17

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	10	52	1.5E-7	IPR001810
SUPERFAMILY	SSF81383	F-box domain	11	132	2.62E-11	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	4	53	3.4E-8	-
SMART	SM00256	fbox_2	14	54	9.1E-5	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G23880.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_048494211.1	F-box protein CPR1 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q9LIR8	F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1
TrEMBL	A0A0K9R497	F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_113930 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	11	gene_16218, gene_16226, gene_2540, gene_2541, gene_2830 ... gene_3299, gene_3300, gene_3301, gene_3302, gene_3303, gene_9796
Amaranthaceae	Atriplex hortensis	8	Ah007104, Ah007689, Ah007690, Ah018643, Ah021126, Ah021127 ... Ah034984, Ah034985
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg15003, Sbi_jg15004, Sbi_jg15099, Sbi_jg29991 ... Sbi_jg30530, Sbi_jg55822
Amaranthaceae	Salicornia europaea	2	Seu_jg26326, Seu_jg28588
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00020049, GOSA_00020050, GOSA_00020051
Amaranthaceae	Suaeda glauca	10	Sgl01365, Sgl01366, Sgl06440, Sgl06519, Sgl06520, Sgl12989 ... Sgl13021, Sgl18247, Sgl18249, Sgl18251
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000000314, gene:ENSEOMG00000003057 ... gene:ENSEOMG00000017590, gene:ENSEOMG00000019675, gene:ENSEOMG00000021988, gene:ENSEOMG00000043234, gene:ENSEOMG00000046206
Amaranthaceae	Chenopodium quinoa	10	CQ.Regalona.r1.2AG0015500, CQ.Regalona.r1.2AG0015510 ... CQ.Regalona.r1.2AG0015520, CQ.Regalona.r1.2BG0017520, CQ.Regalona.r1.3AG0004930, CQ.Regalona.r1.3AG0006880, CQ.Regalona.r1.3AG0006920, CQ.Regalona.r1.3BG0004960, CQ.Regalona.r1.3BG0004970, CQ.Regalona.r1.3BG0006900