Basic Information
Locus ID:
Sbi_jg29962
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000027l | 4482216 | 4489592 | + | Sbi_jg29962 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 150,469.55 Da | 49.47 | 81.27 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1169 | 1276 | 7.12149E-26 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 726 | 908 | 1.0697E-49 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 306 | 950 | 1.2E-95 | IPR000330 |
| Pfam | PF07496 | CW-type Zinc Finger | 558 | 601 | 2.2E-13 | IPR011124 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1168 | 1266 | 1.6E-8 | IPR001650 |
| SUPERFAMILY | SSF81383 | F-box domain | 251 | 293 | 1.13E-7 | IPR036047 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 735 | 904 | 1.22E-21 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 809 | 1292 | 2.84E-32 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 293 | 384 | 4.78E-8 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1072 | 1330 | 4.2E-29 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 720 | 911 | 6.3E-24 | IPR038718 |
| Gene3D | G3DSA:3.30.40.100 | - | 554 | 606 | 2.7E-15 | - |
| SMART | SM00256 | fbox_2 | 261 | 301 | 2.4E-4 | IPR001810 |
| SMART | SM00490 | helicmild6 | 1184 | 1266 | 8.5E-7 | IPR001650 |
| SMART | SM00487 | ultradead3 | 299 | 891 | 2.2E-10 | IPR014001 |
| ProSiteProfiles | PS51050 | Zinc finger CW-type profile. | 553 | 604 | 13.119194 | IPR011124 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1158 | 1304 | 10.185268 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 712 | 867 | 11.50878 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1045 | 1054 | - | IPR017907 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54460.1 | SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein. | 0 |
| RefSeq | XP_010670471.2 | F-box protein At3g54460 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9M1I1 | F-box protein At3g54460 OS=Arabidopsis thaliana OX=3702 GN=At3g54460 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MYA5 | F-box protein At3g54460-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1541 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17169 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032391 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g041480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29962, Sbi_jg43425 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18477 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004235 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66254, Sgl70570 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014745, gene:ENSEOMG00000020728 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0004420, CQ.Regalona.r1.2BG0005620 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30165940 |
| Apiaceae | Apium graveolens | 3 | Ag11G04173, Ag7G01712, Ag8G01535 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G002180 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701638 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G08566 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G54460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010067m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g07960.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g065390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0876 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0889 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g09600 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0022s00035.v1.0, Dusal.0193s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g17190 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1984 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014812 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02355 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4531, BH02.4584, CH02.4635 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1AG0046780 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0320710.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_058087 |
| Poaceae | Oryza coarctata | 2 | Oco01G030060, Oco02G031210 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G403500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403035 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G000930, Chr05G033740 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G794500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG069780, gene_TRIDC3BG078800 |
| Poaceae | Triticum aestivum | 2 | TraesCS3B02G543900.1, TraesCS3D02G490000.1 |
| Poaceae | Zea mays | 2 | Zm00001eb140810_P001, Zm00001eb140820_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10822 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9386 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG10.383, evm.TU.LG17.379, evm.TU.LG25.65 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g21150 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.57 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7154 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13637 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14504, nbisL1-mrna-14505 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.345 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010191 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-243 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22075 |
| Salicaceae | Populus euphratica | 1 | populus_peu35074 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132615369 |
| Solanaceae | Solanum chilense | 1 | SOLCI001589500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004568 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14390 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3892 |
| Zosteraceae | Zostera marina | 1 | Zosma02g16880.v3.1 |