Basic Information
Locus ID:
Sbi_jg29536
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 98995548 | 99002278 | - | Sbi_jg29536 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.46 | 40,659.97 Da | 49.45 | 81.51 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 4.27382E-28 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 141 | 190 | 1.01732E-31 | - |
| Pfam | PF00627 | UBA/TS-N domain | 334 | 369 | 6.1E-11 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 252 | 307 | 1.2E-22 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.1E-18 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 147 | 185 | 1.8E-14 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 86 | 3.68E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 144 | 197 | 1.77E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 249 | 313 | 4.97E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 310 | 380 | 6.44E-15 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 2.3E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 327 | 374 | 7.1E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 140 | 190 | 1.3E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 243 | 308 | 3.2E-27 | IPR036353 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.0E-18 | IPR000626 |
| SMART | SM00727 | CBM | 248 | 293 | 1.5E-4 | IPR006636 |
| SMART | SM00165 | uba_6 | 334 | 371 | 1.2E-7 | IPR015940 |
| SMART | SM00165 | uba_6 | 147 | 187 | 2.5E-6 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 376 | 5.4E-112 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.564405 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 331 | 372 | 13.896332 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 145 | 188 | 12.715573 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 345 | 359 | 3.0E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 360 | 375 | 3.0E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 328 | 344 | 3.0E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 278 | 300 | 3.0E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 99 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_010692904.1 | ubiquitin receptor RAD23d isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LAU3 | Ubiquitin receptor RAD23 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology