Basic Information
Locus ID:
Sbi_jg29457
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 97883546 | 97886475 | + | Sbi_jg29457 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 48,107.24 Da | 64.76 | 74.49 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 236 | 278 | 9.28859E-23 | - |
| CDD | cd02123 | PA_C_RZF_like | 23 | 158 | 1.76099E-43 | IPR044744 |
| Pfam | PF02225 | PA domain | 62 | 146 | 1.0E-10 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 235 | 278 | 8.6E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 229 | 286 | 5.05E-18 | - |
| SUPERFAMILY | SSF52025 | PA domain | 78 | 165 | 1.18E-8 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 22 | 164 | 3.3E-29 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 195 | 283 | 5.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 236 | 277 | 1.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 236 | 278 | 12.031935 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 381 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_021767251.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2-like [Chenopodium quinoa] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M399 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology