Basic Information
Locus ID:
Sbi_jg29093
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RIBOSOMAL protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 90546120 | 90548184 | - | Sbi_jg29093 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.57 | 17,762.52 Da | 38.52 | 96.88 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00432 | Ribosomal_L18_L5e | 37 | 140 | 5.55619E-15 | - |
| Pfam | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | 49 | 142 | 1.6E-9 | IPR005484 |
| SUPERFAMILY | SSF53137 | Translational machinery components | 40 | 140 | 4.71E-18 | - |
| Gene3D | G3DSA:3.30.420.80 | Ribosomal protein S11 | 20 | 145 | 5.5E-16 | IPR036967 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20230.1 | Ribosomal L18p/L5e family protein. | 0 |
| RefSeq | XP_021756450.1 | uncharacterized protein LOC110721582 [Chenopodium quinoa] | 0 |
| A5FZU9 | Large ribosomal subunit protein uL18 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rplR PE=3 SV=1 | 0 | |
| TrEMBL | A0A803LIJ5 | 50S ribosomal protein L18-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1717 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1274 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023357 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg29090, Sbi_jg29093, Sbi_jg3310, Sbi_jg6100, Sbi_jg6102 |
| Amaranthaceae | Salicornia europaea | 5 | Seu_jg15736, Seu_jg15738, Seu_jg6624, Seu_jg6626, Seu_jg6629 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000121 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11464, Sgl16843, Sgl16860 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014126, gene:ENSEOMG00000036052 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0007870, CQ.Regalona.r1.2BG0021640 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30035830 |
| Apiaceae | Apium graveolens | 1 | Ag3G02375 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704673 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G12671 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G20230.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021597m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g18250.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g043670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0991 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0988 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g01020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g21730 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1370 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00008927, Pov_00008930, Pov_00016965 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G28872, Lb5G28877 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3051, BH07.2877, CH07.2959 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0141460, gene-QOZ80_2BG0197060 |
| Poaceae | Oryza coarctata | 2 | Oco03G018570, Oco04G019310 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g46440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G234000 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G023130, Chr15G006280 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G487200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG040380, gene_TRIDC6BG047310 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G263200.1.cds1, TraesCS6B02G290300.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb187680_P002, Zm00001eb251090_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-9087 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14165 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc10g02630, gene.Posoc10g02690 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.668 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9565 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14292 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18222 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.567 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003632 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20010, nbisL1-mrna-2944 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20376 |
| Salicaceae | Populus euphratica | 2 | populus_peu16605, populus_peu18895 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645860 |
| Solanaceae | Solanum chilense | 2 | SOLCI004982800, SOLCI006663500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008007 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.32997_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0059 |
| Zosteraceae | Zostera marina | 1 | Zosma05g09740.v3.1 |