Basic Information
Locus ID:
Sbi_jg29048
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 89594546 | 89602555 | + | Sbi_jg29048 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 156,421.19 Da | 39.41 | 102.74 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 877 | 1125 | 2.59572E-77 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 260 | 548 | 1.14601E-102 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1148 | 1368 | 9.06584E-125 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 574 | 778 | 4.91638E-107 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 875 | 1077 | 2.0E-24 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 262 | 526 | 1.9E-25 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 596 | 730 | 8.2E-20 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1167 | 1315 | 1.9E-28 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 580 | 794 | 7.55E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1141 | 1379 | 3.06E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 250 | 548 | 2.49E-33 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 873 | 1132 | 4.71E-40 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 842 | 1131 | 9.1E-45 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 588 | 827 | 3.1E-68 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 229 | 558 | 1.1E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1133 | 1385 | 5.8E-81 | IPR027417 |
| SMART | SM00382 | AAA_5 | 605 | 778 | 9.1E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1176 | 1368 | 1.2E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 571 | 801 | 21.348654 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1152 | 1384 | 16.693481 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 896 | 1113 | 25.442635 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 264 | 540 | 34.339287 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 703 | 717 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_021853038.1 | putative ABC transporter C family member 15 [Spinacia oleracea] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9R2A4 | ABC-type xenobiotic transporter OS=Spinacia oleracea OX=3562 GN=SOVF_114980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology