halophFGD

Basic Information

Locus ID: Sbi_jg28837

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000008l	84668435	84674118	-	Sbi_jg28837

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.26	136,071.09 Da	36.08	93.06	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	9	317	1.56906E-74	-
Pfam	PF00400	WD domain, G-beta repeat	241	276	1.2E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	45	79	1.5E-4	IPR001680
Pfam	PF06957	Coatomer (COPI) alpha subunit C-terminus	827	1210	1.7E-160	IPR010714
Pfam	PF00400	WD domain, G-beta repeat	126	163	1.8E-7	IPR001680
Pfam	PF04053	Coatomer WD associated region	340	768	3.2E-128	IPR006692
Pfam	PF00400	WD domain, G-beta repeat	198	231	3.6E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	84	121	4.9E-8	IPR001680
SUPERFAMILY	SSF51004	C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase	237	521	4.45E-12	IPR011048
SUPERFAMILY	SSF50978	WD40 repeat-like	4	315	8.24E-73	IPR036322
Gene3D	G3DSA:1.25.40.470	-	640	812	5.4E-64	-
Gene3D	G3DSA:2.130.10.10	-	1	319	3.6E-126	IPR015943
SMART	SM00320	WD40_4	40	79	1.3E-6	IPR001680
SMART	SM00320	WD40_4	82	121	7.8E-9	IPR001680
SMART	SM00320	WD40_4	279	317	310.0	IPR001680
SMART	SM00320	WD40_4	237	276	3.1E-6	IPR001680
SMART	SM00320	WD40_4	193	232	3.4E-6	IPR001680
SMART	SM00320	WD40_4	124	163	5.1E-11	IPR001680
SMART	SM00320	WD40_4	2	37	11.0	IPR001680
PIRSF	PIRSF003354	Alpha-COP	1	1207	0.0	IPR016391
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	89	130	14.05078	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	5	46	8.703868	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	200	241	13.11507	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	89	121	11.181047	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	244	276	11.81377	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	200	234	10.68014	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	47	79	10.047417	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	131	164	12.631039	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	47	88	12.313033	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	131	172	15.454345	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	244	285	14.886235	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	150	164	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	108	122	4.2E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	263	277	4.2E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	150	164	4.2E-7	IPR020472
Coils	Coil	Coil	1118	1145	-	-

Gene Ontology

Biological Process:

GO:0006886 (intracellular protein transport) GO:0016192 (vesicle-mediated transport)

Molecular Function:

GO:0005198 (structural molecule activity) GO:0005515 (protein binding)

Cellular Component:

GO:0030117 (membrane coat) GO:0030126 (COPI vesicle coat)

KEGG Pathway

KO Term:

K05236 (coatomer subunit alpha)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G21390.1	Coatomer, alpha subunit.
RefSeq	XP_010672358.1	coatomer subunit alpha-2 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q9SJT9	Coatomer subunit alpha-2 OS=Arabidopsis thaliana OX=3702 GN=At2g21390 PE=2 SV=1
TrEMBL	A0A803LKE7	Coatomer subunit alpha OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg11823, jg22921, jg6331
Aizoaceae	Mesembryanthemum crystallinum	2	gene_21686, gene_23066
Amaranthaceae	Atriplex hortensis	2	Ah010166, Ah023494
Amaranthaceae	Beta vulgaris	2	BVRB_1g006300, BVRB_9g216820
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg12377, Sbi_jg28837, Sbi_jg3100, Sbi_jg45965
Amaranthaceae	Salicornia europaea	2	Seu_jg20296, Seu_jg6800
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000002, GOSA_00005641, GOSA_00022497
Amaranthaceae	Suaeda glauca	4	Sgl11621, Sgl17119, Sgl56148, Sgl60851
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000013151, gene:ENSEOMG00000018082 ... gene:ENSEOMG00000035845, gene:ENSEOMG00000048140, gene:ENSEOMG00000049535
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0009120, CQ.Regalona.r1.1BG0016730 ... CQ.Regalona.r1.7BG0007040, CQ.Regalona.r1.9AG0017560
Anacardiaceae	Pistacia vera	2	pistato.v30047210, pistato.v30115410
Apiaceae	Apium graveolens	3	Ag1G00944, Ag4G02289, Ag9G00871
Arecaceae	Cocos nucifera	4	COCNU_07G005410, COCNU_10G003700, COCNU_10G003710 ... COCNU_16G003990
Arecaceae	Phoenix dactylifera	4	gene-LOC103707916, gene-LOC103711684, gene-LOC103711687 ... gene-LOC103716534
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.1564.V1.1, AsparagusV1_03.1565.V1.1 ... AsparagusV1_03.297.V1.1, AsparagusV1_03.298.V1.1, AsparagusV1_07.3590.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G00265, Ftri9G15036, Ftri9G25855
Brassicaceae	Arabidopsis thaliana	2	AT1G62020.1, AT2G21390.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10000016m.g.v1.0, Thhalv10024239m.g.v1.0 ... Thhalv10024240m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp7g36760.v2.2, SpUn0316_0020.v2.2, SpUn0316_0030.v2.2
Brassicaceae	Brassica nigra	5	BniB02g017130.2N, BniB02g051810.2N, BniB02g089160.2N ... BniB03g015090.2N, BniB05g000410.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G0943, Ceq07G1531
Casuarinaceae	Casuarina glauca	1	Cgl07G1629
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno15g04040, gene.Cymno18g03810
Dunaliellaceae	Dunaliella salina	3	Dusal.1106s00001.v1.0, Dusal.1106s00002.v1.0 ... Dusal.1106s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g04720, gene.Thate07g02870
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG08.198, evm.TU.LG08.200
Plantaginaceae	Plantago ovata	3	Pov_00002523, Pov_00028976, Pov_00032513
Plumbaginaceae	Limonium bicolor	5	Lb3G17297, Lb3G17302, Lb3G17306, Lb4G25861, Lb4G25871
Poaceae	Echinochloa crus-galli	8	AH01.852, AH02.290, BH01.996, BH02.309, BH02.313, CH01.1040 ... CH02.341, CH02.344
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0219120, gene-QOZ80_3AG0232670 ... gene-QOZ80_3BG0264450, gene-QOZ80_3BG0295300
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.4HG0337110.1, HORVU.MOREX.r3.4HG0416190.1
Poaceae	Lolium multiflorum	2	gene-QYE76_062439, gene-QYE76_062878
Poaceae	Oryza coarctata	5	Oco05G021610, Oco05G021620, Oco06G022410, Oco09G003640 ... Oco17G000570
Poaceae	Oryza sativa	3	LOC_Os03g50340.1, LOC_Os03g50350.1, LOC_Os09g04110.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G107100, gene-BS78_04G305200
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0101032, Pt_Chr0101145, Pt_Chr0105043
Poaceae	Sporobolus alterniflorus	10	Chr01G007080, Chr01G007120, Chr04G005190, Chr04G026930 ... Chr04G026940, Chr06G030160, Chr06G032340, Chr07G025920, Chr09G002000, Chr12G030370
Poaceae	Thinopyrum elongatum	2	Tel4E01G082500, Tel4E01G606600
Poaceae	Triticum dicoccoides	4	gene_TRIDC4AG041810, gene_TRIDC4BG007220 ... gene_TRIDC4BG062010, gene_TRIDC5AG076630
Poaceae	Triticum aestivum	6	TraesCS4A02G268100.1, TraesCS4B02G046300.1 ... TraesCS4B02G373400.1, TraesCS4D02G045800.1, TraesCS4D02G363900.2, TraesCS5A02G540800.1
Poaceae	Zea mays	3	Zm00001eb054910_P001, Zm00001eb120410_P002 ... Zm00001eb216390_P001
Poaceae	Zoysia japonica	3	nbis-gene-1014, nbis-gene-14818, nbis-gene-15917
Poaceae	Zoysia macrostachya	3	Zma_g2957, Zma_g6445, Zma_g648
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.319, evm.TU.LG08.1772, evm.TU.LG09.1603 ... evm.TU.LG19.583, evm.TU.LG22.723, evm.TU.LG24.47
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g18990, gene.Posoc07g04700, gene.Posoc09g02360
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.2232, evm.TU.Scaffold_2_RagTag.172 ... evm.TU.Scaffold_8_RagTag.1274
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-5035
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11826, nbisL1-mrna-14291, nbisL1-mrna-9935
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-15371, nbisL1-mrna-3317, nbisL1-mrna-9423
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000009l.1129, evm.TU.utg000016l.127 ... evm.TU.utg000018l.414
Rhizophoraceae	Kandelia obovata	3	Maker00003675, Maker00005137, Maker00016473
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-13348, nbisL1-mrna-14177
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-11130, nbisL1-mrna-14153, nbisL1-mrna-21077
Salicaceae	Populus euphratica	4	populus_peu28573, populus_peu29997, populus_peu30017 ... populus_peu30018
Solanaceae	Lycium barbarum	2	gene-LOC132617058, gene-LOC132628078
Solanaceae	Solanum chilense	1	SOLCI001135400
Solanaceae	Solanum pennellii	2	gene-LOC107017620, gene-LOC107025827
Tamaricaceae	Reaumuria soongarica	3	STRG.18510_chr09_-, gene_15460, gene_7841
Tamaricaceae	Tamarix chinensis	4	TC09G0602, TC10G0426, TC12G0987, TC12G0989
Zosteraceae	Zostera marina	2	Zosma01g07520.v3.1, Zosma05g00460.v3.1