Basic Information
Locus ID:
Sbi_jg28803
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 83233941 | 83236833 | + | Sbi_jg28803 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 66,939.93 Da | 36.46 | 71.45 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 19 | 149 | 6.99959E-45 | IPR033734 |
| CDD | cd09612 | Jacalin | 263 | 392 | 9.11749E-38 | IPR033734 |
| CDD | cd09612 | Jacalin | 463 | 590 | 5.64798E-42 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 19 | 150 | 1.3E-31 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 263 | 392 | 8.1E-28 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 460 | 590 | 3.5E-32 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 450 | 589 | 1.18E-42 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 253 | 391 | 4.84E-37 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 8 | 150 | 2.88E-44 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 2 | 148 | 9.3E-56 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 243 | 392 | 7.6E-47 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 445 | 590 | 3.3E-53 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 19 | 150 | 6.4E-42 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 263 | 393 | 5.8E-34 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 460 | 591 | 2.7E-43 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 449 | 591 | 52.615253 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 8 | 150 | 53.084213 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 252 | 393 | 44.652309 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_048495353.1 | jacalin-related lectin 3 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R622 | Jacalin-related lectin 3-like OS=Spinacia oleracea OX=3562 GN=SOVF_109100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology