Basic Information
Locus ID:
Sbi_jg27579
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Tudor PWWP MBT superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 26094318 | 26100070 | - | Sbi_jg27579 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 87,189.13 Da | 37.66 | 70.79 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 233 | 314 | 2.4226E-25 | - |
| CDD | cd00590 | RRM_SF | 660 | 712 | 0.00136545 | - |
| Pfam | PF00855 | PWWP domain | 235 | 316 | 2.8E-15 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 233 | 337 | 3.13E-23 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 644 | 723 | 4.75E-7 | IPR035979 |
| Gene3D | G3DSA:2.30.30.140 | - | 221 | 326 | 6.3E-22 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 658 | 749 | 5.3E-5 | IPR012677 |
| SMART | SM00293 | PWWP_4 | 233 | 294 | 6.6E-10 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 235 | 296 | 13.583243 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 553 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 495 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02950.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_021865134.1 | uncharacterized protein LOC110803906 [Spinacia oleracea] | 0 |
| Q9LYZ0 | PWWP domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDP5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RXW3 | PWWP domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_016280 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology