halophFGD

Basic Information

Locus ID: Sbi_jg27518

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000008l	23831456	23832144	+	Sbi_jg27518

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.74	20,244.44 Da	20.77	103.93	0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00141	Peroxidase	50	150	1.3E-22	IPR002016
SUPERFAMILY	SSF48113	Heme-dependent peroxidases	34	147	3.54E-34	IPR010255
Gene3D	G3DSA:1.10.520.10	-	34	171	1.5E-42	-
ProSiteProfiles	PS50873	Plant heme peroxidase family profile.	33	162	29.777084	IPR002016
ProSitePatterns	PS00436	Peroxidases active site signature.	65	76	-	IPR019794
PRINTS	PR00461	Plant peroxidase signature	129	139	9.4E-21	IPR000823
PRINTS	PR00461	Plant peroxidase signature	108	121	9.4E-21	IPR000823
PRINTS	PR00461	Plant peroxidase signature	67	87	9.4E-21	IPR000823
PRINTS	PR00461	Plant peroxidase signature	43	62	9.4E-21	IPR000823
PRINTS	PR00458	Haem peroxidase superfamily signature	130	147	1.3E-8	IPR002016
PRINTS	PR00458	Haem peroxidase superfamily signature	65	79	1.3E-8	IPR002016

Gene Ontology

Biological Process:

GO:0006979 (response to oxidative stress)

Molecular Function:

GO:0004601 (peroxidase activity) GO:0020037 (heme binding)

KEGG Pathway

KO Term:

K00430 (peroxidase [EC:1.11.1.7])

Pathway:

ko00940 (Phenylpropanoid biosynthesis) map00940 (Phenylpropanoid biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Reaction:

R00602 (Methanol + Hydrogen peroxide <=> Formaldehyde + 2 H2O) R02596 (Coniferyl alcohol <=> Guaiacyl lignin) R03919 (Sinapyl alcohol <=> Syringyl lignin) R04007 (4-Coumaryl alcohol <=> p-Hydroxyphenyl lignin) R07443 (5-Hydroxyconiferyl alcohol <=> 5-Hydroxy-guaiacyl lignin)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G67400.1	root hair specific 19.
RefSeq	XP_021714435.1	peroxidase 50-like [Chenopodium quinoa]
Swiss-Prot	Q43873	Peroxidase 73 OS=Arabidopsis thaliana OX=3702 GN=PER73 PE=1 SV=1
TrEMBL	A0A803KY75	Peroxidase OS=Chenopodium quinoa OX=63459 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg15606, Sbi_jg19613, Sbi_jg27518, Sbi_jg53453 ... Sbi_jg60288, Sbi_jg6976
Apiaceae	Apium graveolens	1	Ag7G01434
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.1484.V1.1, AsparagusV1_04.2628.V1.1 ... AsparagusV1_09.1390.V1.1
Poaceae	Zea mays	1	Zm00001eb058250_P001
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_6_RagTag.22