Basic Information
Locus ID:
Sbi_jg27021
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 7985812 | 7986707 | + | Sbi_jg27021 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 12,346.63 Da | 31.57 | 79.32 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 100 | 7.61E-10 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 117 | 6.2E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 56 | 96 | 6.6E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 63 | 100 | 10.14085 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 63 | 100 | 8.544697 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 60 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19520.1 | Transducin family protein / WD-40 repeat family protein. Controls flowering. | 0 |
| RefSeq | XP_021846063.1 | WD-40 repeat-containing protein MSI4-like [Spinacia oleracea] | 0 |
| O22607 | WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana OX=3702 GN=MSI4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9QTU6 | CAF1C_H4-bd domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_142200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Sbi_jg27021.