Basic Information
Locus ID:
Sbi_jg26619
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
neutrophil clearance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 2367661 | 2371489 | - | Sbi_jg26619 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 102,945.59 Da | 39.36 | 88.75 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 593 | 868 | 1.76882E-95 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 332 | 370 | 1.3E-4 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 40 | 72 | 6.1E-5 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 590 | 863 | 1.2E-47 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 39 | 442 | 1.25E-46 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 574 | 874 | 1.2E-76 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 554 | 664 | 2.0E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 333 | 458 | 3.8E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 39 | 329 | 3.1E-72 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 665 | 881 | 3.7E-58 | - |
| SMART | SM00369 | LRR_typ_2 | 194 | 217 | 0.46 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 396 | 420 | 25.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 98 | 120 | 99.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 587 | 869 | 3.7E-40 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 145 | 170 | 35.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 121 | 144 | 92.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 587 | 869 | 40.230324 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 100 | 122 | 7.711955 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 593 | 615 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 712 | 724 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 919 | 941 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_010685103.2 | receptor-like kinase TMK4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RIU5 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_061690 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology