Basic Information
Locus ID:
Sbi_jg26556
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
LON peptidase N-terminal domain and RING finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000008l | 1774587 | 1775729 | + | Sbi_jg26556 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 42,180.77 Da | 65.89 | 63.16 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 332 | 369 | 2.18979E-10 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 330 | 373 | 3.7E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 331 | 376 | 9.9E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 301 | 380 | 9.2E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 332 | 369 | 2.1E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 332 | 370 | 10.984472 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 256 | - | - |
| Coils | Coil | Coil | 302 | 323 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_021720045.1 | uncharacterized protein LOC110687733 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9R914 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_092810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology