Basic Information
Locus ID:
Sbi_jg26347
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000016l | 46911457 | 46936502 | - | Sbi_jg26347 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 130,653.04 Da | 46.47 | 77.28 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1031 | 1138 | 1.42663E-54 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 485 | 759 | 1.27613E-65 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 505 | 726 | 3.1E-35 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 874 | 910 | 6.1E-7 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1029 | 1128 | 6.4E-16 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 728 | 837 | 7.8E-12 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 473 | 759 | 3.99E-26 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 873 | 918 | 6.03E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 768 | 1185 | 2.42E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 771 | 867 | 2.5E-5 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 464 | 635 | 7.7E-22 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 934 | 1185 | 1.5E-57 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 868 | 926 | 1.6E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 636 | 729 | 9.3E-9 | IPR038718 |
| SMART | SM00487 | ultradead3 | 481 | 771 | 5.8E-12 | IPR014001 |
| SMART | SM00184 | ring_2 | 874 | 912 | 0.0016 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1045 | 1128 | 2.2E-19 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1022 | 1176 | 16.075897 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 874 | 913 | 10.600894 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 889 | 898 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 680 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 643 | 682 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021740504.1 | helicase-like transcription factor CHR28 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QNB3 | DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_160060 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology