Basic Information
Locus ID:
Sbi_jg26245
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000016l | 41723831 | 41736429 | - | Sbi_jg26245 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 113,619.41 Da | 56.31 | 77.84 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 236 | 370 | 1.90718E-19 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 259 | 368 | 2.7E-6 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 919 | 985 | 1.7E-4 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 788 | 848 | 2.98E-6 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 139 | 396 | 2.27E-19 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 916 | 993 | 4.3E-14 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 141 | 399 | 1.4E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 912 | 995 | 1.7E-9 | - |
| SMART | SM00577 | forpap2 | 203 | 379 | 1.0E-10 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 918 | 986 | 7.7E-10 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 785 | 849 | 0.022 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 144 | 392 | 15.612799 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 813 | 850 | 8.518146 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 917 | 987 | 11.843998 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 583 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 721 | 745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 746 | 768 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 989 | 1033 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 699 | 782 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_010686545.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QNK5 | protein-serine/threonine phosphatase OS=Spinacia oleracea OX=3562 GN=SOVF_159350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology