Basic Information
Locus ID:
Sbi_jg26043
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000016l | 31736367 | 31749457 | - | Sbi_jg26043 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 80,218.91 Da | 45.33 | 73.46 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 447 | 725 | 1.27258E-55 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 610 | 641 | 0.0055 | IPR001680 |
| Pfam | PF08513 | LisH | 18 | 37 | 2.6E-5 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 484 | 517 | 7.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 524 | 561 | 0.092 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 444 | 475 | 4.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 690 | 724 | 0.17 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 439 | 724 | 1.98E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 392 | 568 | 5.1E-34 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 569 | 725 | 3.5E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 603 | 641 | 5.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 645 | 684 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 436 | 475 | 8.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 687 | 725 | 2.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 564 | 600 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 478 | 517 | 2.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 521 | 561 | 2.5E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 443 | 478 | 8.966513 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 528 | 570 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 694 | 725 | 10.390142 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 9 | 41 | 8.787457 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 485 | 517 | 14.251289 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 485 | 517 | 11.787407 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 528 | 563 | 9.335602 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 443 | 484 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 694 | 725 | 10.809215 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 548 | 562 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 134 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_019106660.1 | transcriptional corepressor LEUNIG isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RWK8 | LisH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_026770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology