Basic Information
Locus ID:
Sbi_jg260
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Retrotransposon gag protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000007l | 7451170 | 7451685 | + | Sbi_jg260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 11,500.87 Da | 38.21 | 92.53 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | Coil | Coil | 8 | 28 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010693384.1 | uncharacterized protein LOC104906343 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A1J3G118 | Retrotrans_gag domain-containing protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=LC_TR12665_c1_g1_i1_g.44293 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 38 | Sbi_jg11007, Sbi_jg11359, Sbi_jg11360, Sbi_jg13582 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15426, Seu_jg18148 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g06310 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_16_RagTag.678, evm.TU.Scaffold_3_RagTag.1025 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21800 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1437 |