Basic Information
Locus ID:
Sbi_jg25979
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000016l | 29265915 | 29267864 | + | Sbi_jg25979 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.74 | 23,985.12 Da | 46.14 | 70.91 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 20 | 132 | 4.4E-19 | IPR000719 |
| Pfam | PF11883 | Domain of unknown function (DUF3403) | 169 | 207 | 3.9E-9 | IPR021820 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 3 | 132 | 3.51E-38 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 32 | 147 | 1.0E-29 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 31 | 2.5E-5 | - |
| SMART | SM00220 | serkin_6 | 1 | 197 | 0.0077 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 209 | 18.944519 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 64 | 76 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21380.1 | receptor kinase 3. encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels. | 0 |
| RefSeq | XP_021846808.1 | receptor-like serine/threonine-protein kinase SD1-8 isoform X2 [Spinacia oleracea] | 0 |
| O81905 | Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LL15 | Receptor-like serine/threonine-protein kinase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25977, Sbi_jg25979 |