Basic Information
Locus ID:
Sbi_jg25927
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
U-box domain-containing protein 21-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000016l | 28080523 | 28081851 | - | Sbi_jg25927 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 49,521.28 Da | 45.46 | 106.02 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 28 | 70 | 3.6662E-26 | - |
| Pfam | PF04564 | U-box domain | 24 | 95 | 5.8E-22 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 141 | 420 | 1.54E-13 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 24 | 98 | 4.95E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 97 | 6.0E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 111 | 419 | 9.1E-13 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 27 | 90 | 2.9E-30 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 23 | 97 | 37.357159 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021719575.1 | U-box domain-containing protein 20-like [Chenopodium quinoa] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LKZ9 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology