Basic Information
Locus ID:
Sbi_jg25904
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Glyco_18
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000016l | 27162558 | 27173085 | + | Sbi_jg25904 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 41,804.59 Da | 29.81 | 71.57 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 44 | 367 | 6.6E-70 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 44 | 378 | 6.88E-57 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 270 | 338 | 1.55E-6 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 56 | 369 | 5.4E-84 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 269 | 337 | 5.4E-84 | IPR029070 |
| SMART | SM00636 | 2g34 | 40 | 367 | 1.6E-68 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 40 | 382 | 58.261909 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 142 | 150 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_010688359.1 | class V chitinase [Beta vulgaris subsp. vulgaris] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R3W0 | GH18 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_109800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology