Basic Information
Locus ID:
Sbi_jg25687
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
cationic amino acid transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000016l | 19865734 | 19867482 | - | Sbi_jg25687 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 64,119.79 Da | 32.52 | 112.58 | 0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13520 | Amino acid permease | 67 | 440 | 1.4E-43 | IPR002293 |
| Pfam | PF13906 | C-terminus of AA_permease | 505 | 555 | 9.2E-16 | IPR029485 |
| Gene3D | G3DSA:1.20.1740.10 | Amino acid/polyamine transporter I | 63 | 496 | 7.0E-91 | - |
| PIRSF | PIRSF006060 | AA_transporter | 43 | 501 | 9.1E-66 | - |
| PIRSF | PIRSF006060 | AA_transporter | 448 | 571 | 0.94 | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21120.1 | amino acid transporter 1. Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. | 0 |
| RefSeq | XP_006448938.1 | cationic amino acid transporter 1 [Citrus clementina] | 0 |
| Q84MA5 | Cationic amino acid transporter 1 OS=Arabidopsis thaliana OX=3702 GN=CAT1 PE=1 SV=1 | 0 | |
| TrEMBL | V4UIS2 | AA_permease_C domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10014647mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology