halophFGD

Basic Information

Locus ID: Sbi_jg25567

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: Translocase of chloroplast 90

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000016l	16591124	16594494	+	Sbi_jg25567

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.24	88,667.49 Da	43.34	85.29	-0.42

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF11886	Translocase of chloroplast 159/132, membrane anchor domain	515	778	6.7E-109	IPR024283
Pfam	PF04548	AIG1 family	170	329	1.3E-22	IPR006703
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	157	296	2.67E-19	IPR027417
Gene3D	G3DSA:3.40.50.300	-	139	387	2.7E-54	IPR027417
TIGRFAM	TIGR00993	3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains	53	778	3.5E-203	IPR005690
ProSiteProfiles	PS51720	AIG1-type G domain profile.	167	398	28.109529	IPR006703
MobiDBLite	mobidb-lite	consensus disorder prediction	487	510	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	28	74	-	-
Coils	Coil	Coil	141	161	-	-

Gene Ontology

Biological Process:

GO:0045036 (protein targeting to chloroplast)

Molecular Function:

GO:0003924 (GTPase activity) GO:0005525 (GTP binding)

Cellular Component:

GO:0009707 (chloroplast outer membrane)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G20300.1	Avirulence induced gene (AIG1) family protein.
RefSeq	XP_010687870.1	translocase of chloroplast 90, chloroplastic isoform X1 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q6S5G3	Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TOC90 PE=1 SV=1
TrEMBL	A0A0K9QP45	AIG1-type G domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_157510 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg12427, jg16082, jg26158, jg30354, jg30355, jg31608 ... jg31609, jg35194
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10598, gene_21886, gene_5203
Amaranthaceae	Atriplex hortensis	3	Ah009698, Ah014270, Ah029964
Amaranthaceae	Beta vulgaris	3	BVRB_8g193370, BVRB_9g214410, BVRB_9g217720
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg12172, Sbi_jg25567, Sbi_jg4322, Sbi_jg4323, Sbi_jg9388 ... Sbi_jg47118, Sbi_jg49499, Sbi_jg49501
Amaranthaceae	Salicornia europaea	4	Seu_jg19225, Seu_jg21401, Seu_jg5745, Seu_jg5746
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00011037, GOSA_00020407, GOSA_00021401, GOSA_00021403 ... GOSA_00021405, GOSA_00026966
Amaranthaceae	Suaeda glauca	7	Sgl11266, Sgl11269, Sgl16661, Sgl41934, Sgl46725, Sgl66501 ... Sgl70832
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000006293, gene:ENSEOMG00000011617 ... gene:ENSEOMG00000032061, gene:ENSEOMG00000036078, gene:ENSEOMG00000039062, gene:ENSEOMG00000041578, gene:ENSEOMG00000052020
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.7AG0013120, CQ.Regalona.r1.7BG0003180 ... CQ.Regalona.r1.7BG0015050, CQ.Regalona.r1.8AG0022680, CQ.Regalona.r1.8BG0019750, CQ.Regalona.r1.9AG0021410
Anacardiaceae	Pistacia vera	4	pistato.v30009290, pistato.v30216830, pistato.v30234480 ... pistato.v30261650
Apiaceae	Apium graveolens	6	Ag11G04036, Ag2G02860, Ag6G02357, Ag6G02358, Ag9G02236 ... Ag9G02240
Arecaceae	Cocos nucifera	4	COCNU_01G016040, COCNU_07G002080, COCNU_10G001490 ... scaffold001310G000020
Arecaceae	Phoenix dactylifera	7	gene-LOC103697442, gene-LOC103706145, gene-LOC103706480 ... gene-LOC103707491, gene-LOC103713815, gene-LOC120111332, gene-LOC120112134
Asparagaceae	Asparagus officinalis	7	AsparagusV1_01.114.V1.1, AsparagusV1_05.1372.V1.1 ... AsparagusV1_05.3297.V1.1, AsparagusV1_07.994.V1.1, AsparagusV1_07.995.V1.1, AsparagusV1_08.3160.V1.1, AsparagusV1_10.1662.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G32894, Ftri13G06477, Ftri15G15260
Brassicaceae	Arabidopsis thaliana	4	AT2G16640.1, AT3G16620.1, AT4G02510.1, AT5G20300.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10012730m.g.v1.0, Thhalv10022323m.g.v1.0 ... Thhalv10022525m.g.v1.0, Thhalv10028361m.g.v1.0, Thhalv10029135m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g30110.v2.2, Sp6g02420.v2.2, Sp6g24120.v2.2
Brassicaceae	Brassica nigra	3	BniB01g048030.2N, BniB02g042470.2N, BniB08g045120.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq06G0943, Ceq06G1401, Ceq07G1681, Ceq09G1153
Casuarinaceae	Casuarina glauca	4	Cgl06G0969, Cgl06G1464, Cgl07G1816, Cgl07G1822
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno01g02010, gene.Cymno02g10800, gene.Cymno02g16850 ... gene.Cymno04g14410
Dunaliellaceae	Dunaliella salina	2	Dusal.0091s00005.v1.0, Dusal.0321s00014.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate01g02950, gene.Thate01g22120, gene.Thate06g03850 ... gene.Thate06g24990
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG04.335, evm.TU.LG07.602, evm.TU.LG08.282 ... evm.TU.LG11.1309
Plantaginaceae	Plantago ovata	2	Pov_00001596, Pov_00025033
Plumbaginaceae	Limonium bicolor	5	Lb1G03807, Lb1G06814, Lb1G06815, Lb3G15588, Lb3G15590
Poaceae	Echinochloa crus-galli	10	AH01.3003, AH01.494, AH02.2159, AH05.417, BH01.244, BH05.476 ... BH02.2238, CH01.3582, CH02.2392, CH05.540
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_2AG0115770, gene-QOZ80_2BG0169640 ... gene-QOZ80_3AG0209380, gene-QOZ80_3BG0254530, gene-QOZ80_5AG0384840, gene-QOZ80_5AG0404670, gene-QOZ80_5BG0431670, gene-QOZ80_5BG0452780
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.1HG0055730.1
Poaceae	Lolium multiflorum	5	gene-QYE76_002680, gene-QYE76_002681, gene-QYE76_009634 ... gene-QYE76_012485, gene-QYE76_060417
Poaceae	Oryza coarctata	8	Oco05G028270, Oco06G029260, Oco09G002540, Oco10G002560 ... Oco19G009540, Oco20G009440, Oco23G003470, Oco24G003060
Poaceae	Oryza sativa	4	LOC_Os03g61890.2, LOC_Os05g05950.1, LOC_Os10g40110.1 ... LOC_Os12g09570.2
Poaceae	Paspalum vaginatum	4	gene-BS78_01G019800, gene-BS78_01G294100 ... gene-BS78_08G058200, gene-BS78_09G048200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0501973, Pt_Chr0502095
Poaceae	Sporobolus alterniflorus	15	Chr01G000910, Chr01G012190, Chr04G023720, Chr06G025700 ... Chr06G028260, Chr09G004410, Chr12G024460, Chr12G032490, Chr13G020520, Chr15G019510, Chr18G000920, Chr18G007850, Chr19G013330, Chr19G013340, Chr22G015040
Poaceae	Thinopyrum elongatum	5	Tel1E01G191600, Tel1E01G357400, Tel3E01G668400 ... Tel5E01G210600, Tel5E01G797000
Poaceae	Triticum dicoccoides	8	gene_TRIDC1AG017150, gene_TRIDC1AG031390 ... gene_TRIDC1BG017660, gene_TRIDC1BG036840, gene_TRIDC4AG053520, gene_TRIDC5AG017990, gene_TRIDC5BG018210, gene_TRIDC5BG076670
Poaceae	Triticum aestivum	12	TraesCS1A02G093900.3, TraesCS1A02G208000.1.cds1 ... TraesCS1B02G122000.4, TraesCS1B02G222000.1.cds1, TraesCS1D02G102500.3, TraesCS1D02G211300.1.cds1, TraesCS4A02G358400.1, TraesCS5A02G112900.1, TraesCS5B02G109100.1, TraesCS5B02G514000.1.cds1, TraesCS5D02G120200.1, TraesCS5D02G514500.1.cds1
Poaceae	Zea mays	7	Zm00001eb022910_P001, Zm00001eb063660_P002 ... Zm00001eb211170_P001, Zm00001eb264300_P001, Zm00001eb267970_P001, Zm00001eb354100_P001, Zm00001eb391770_P001
Poaceae	Zoysia japonica	5	nbis-gene-12240, nbis-gene-15590, nbis-gene-18176 ... nbis-gene-23427, nbis-gene-36262
Poaceae	Zoysia macrostachya	5	Zma_g103, Zma_g12860, Zma_g25608, Zma_g26446, Zma_g27711
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.142, evm.TU.LG02.1855, evm.TU.LG04.612 ... evm.TU.LG09.86
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g32570, gene.Posoc02g08360, gene.Posoc02g10040 ... gene.Posoc03g03960
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_10_RagTag.82, evm.TU.Scaffold_16_RagTag.412 ... evm.TU.Scaffold_1_RagTag.2292, evm.TU.Scaffold_2_RagTag.117, evm.TU.Scaffold_4_RagTag.2278, evm.TU.Scaffold_9_RagTag.822
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-12903, nbisL1-mrna-25192, nbisL1-mrna-29718 ... nbisL1-mrna-29721, nbisL1-mrna-6028
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-11018, nbisL1-mrna-1129, nbisL1-mrna-19956 ... nbisL1-mrna-20939, nbisL1-mrna-6619
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-16521, nbisL1-mrna-18475, nbisL1-mrna-20127 ... nbisL1-mrna-3267, nbisL1-mrna-5016, nbisL1-mrna-9376
Rhizophoraceae	Kandelia candel	6	add.evm.TU.utg000003l.214, add.evm.TU.utg000009l.465 ... add.evm.TU.utg000016l.26, add.evm.TU.utg000022l.147, evm.TU.utg000008l.1331, evm.TU.utg000033l.55
Rhizophoraceae	Kandelia obovata	4	Maker00000322, Maker00009899, Maker00014527, Maker00017005
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-17339, nbisL1-mrna-18080, nbisL1-mrna-1852 ... nbisL1-mrna-18579, nbisL1-mrna-22462
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-14484, nbisL1-mrna-21128, nbisL1-mrna-22299 ... nbisL1-mrna-22433, nbisL1-mrna-5226, nbisL1-mrna-6467
Salicaceae	Populus euphratica	9	populus_peu05702, populus_peu08047, populus_peu08085 ... populus_peu08740, populus_peu11084, populus_peu19222, populus_peu22207, populus_peu36611, populus_peu38093
Solanaceae	Lycium barbarum	4	gene-LOC132599297, gene-LOC132603114, gene-LOC132608951 ... gene-LOC132645058
Solanaceae	Solanum chilense	4	SOLCI000141800, SOLCI003627400, SOLCI003917900 ... SOLCI005746900
Solanaceae	Solanum pennellii	4	gene-LOC107006205, gene-LOC107025996, gene-LOC107030552 ... gene-LOC107032710
Tamaricaceae	Reaumuria soongarica	4	STRG.12235_chr02_-, STRG.13001_chr02_-, STRG.20850_chr08_+ ... gene_6252
Tamaricaceae	Tamarix chinensis	4	TC01G0347, TC10G0092, TC10G1190, TC12G0731
Zosteraceae	Zostera marina	4	Zosma01g33500.v3.1, Zosma04g10780.v3.1, Zosma06g21550.v3.1 ... Zosma189g00020.v3.1