Basic Information
Locus ID:
Sbi_jg25355
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000016l | 12781026 | 12783246 | + | Sbi_jg25355 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 41,658.35 Da | 64.75 | 68.66 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 229 | 271 | 1.8E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 19 | 52 | 2.9E-12 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 213 | 278 | 1.86E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 192 | 278 | 3.3E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 230 | 270 | 1.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 230 | 271 | 12.326995 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021838461.1 | probable E3 ubiquitin-protein ligase RHC1A isoform X1 [Spinacia oleracea] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QRX9 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_155210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology