Basic Information
Locus ID:
Sbi_jg25307
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000016l | 11798432 | 11803004 | - | Sbi_jg25307 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 30,819.72 Da | 67.27 | 61.06 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 224 | 266 | 8.77641E-15 | - |
| Pfam | PF13639 | Ring finger domain | 224 | 266 | 6.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 216 | 270 | 9.06E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 179 | 271 | 2.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 225 | 265 | 3.8E-6 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 221 | 272 | 8.5E-4 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 225 | 266 | 12.799091 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 65 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49850.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010687503.1 | probable E3 ubiquitin-protein ligase RHY1A isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q852U6 | Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana OX=3702 GN=RHY1A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8EKZ7 | RING-type domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_8g190440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1148 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9486 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015885 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g190440 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25307, Sbi_jg9156 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19432 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011193 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl42987, Sgl47803, Sgl47809, Sgl47834 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009785, gene:ENSEOMG00000034071 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0012840, CQ.Regalona.r1.8BG0014200 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30104620 |
| Apiaceae | Apium graveolens | 2 | Ag9G00220, AgUnG01196 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G010650 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705266, gene-LOC103709207 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.2153.V1.1, AsparagusV1_07.2923.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G25557, Ftri4G15893 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G49850.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011738m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g36740.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g033720.2N, BniB07g005640.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0298 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0335 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g04210 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g05240 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.576 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012193 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4584, BH01.2543, Contig181.7 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0238090, gene-QOZ80_3BG0289930 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0398100.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_070036 |
| Poaceae | Oryza coarctata | 2 | Oco05G005970, Oco06G006120 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g10890.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G437000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0101610 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr05G021620, Chr07G009590 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G432800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG006870, gene_TRIDC4BG044280 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G049500.1, TraesCS4B02G255400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb007270_P001, Zm00001eb400600_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4115 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1826, Zma_g4183 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1544, evm.TU.LG22.437 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g08460 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2040 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5846 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6669 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3491 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.241 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016357 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4803 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13981 |
| Salicaceae | Populus euphratica | 3 | populus_peu01576, populus_peu01592, populus_peu36242 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598961 |
| Solanaceae | Solanum chilense | 1 | SOLCI003635400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009405 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12601_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0768 |
| Zosteraceae | Zostera marina | 1 | Zosma01g01450.v3.1 |