Basic Information
Locus ID:
Sbi_jg25278
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000016l | 11228373 | 11249381 | - | Sbi_jg25278 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 81,553.73 Da | 47.77 | 86.10 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08771 | DLP_1 | 37 | 330 | 9.32941E-66 | IPR001401 |
| Pfam | PF00350 | Dynamin family | 39 | 219 | 5.3E-28 | IPR045063 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 11 | 338 | 1.61E-40 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 14 | 384 | 9.6E-56 | IPR027417 |
| SMART | SM00053 | dynamin_3 | 10 | 236 | 7.6E-6 | IPR001401 |
| ProSiteProfiles | PS51718 | Dynamin-type guanine nucleotide-binding (G) domain profile. | 33 | 330 | 60.954422 | IPR030381 |
| PRINTS | PR00195 | Dynamin signature | 137 | 154 | 1.4E-12 | IPR022812 |
| PRINTS | PR00195 | Dynamin signature | 208 | 224 | 1.4E-12 | IPR022812 |
| PRINTS | PR00195 | Dynamin signature | 36 | 54 | 1.4E-12 | IPR022812 |
| PRINTS | PR00195 | Dynamin signature | 61 | 78 | 1.4E-12 | IPR022812 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 588 | 616 | - | - |
| Coils | Coil | Coil | 333 | 353 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19720.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. Encodes a novel chloroplast division protein. Mutants of exhibit defects in chloroplast constriction, have enlarged, dumbbell-shaped chloroplasts. The ARC5 gene product shares similarity with the dynamin family of GTPases, which mediate endocytosis, mitochondrial division, and other organellar fission and fusion events in eukaryotes. Phylogenetic analysis showed that ARC5 is related to a group of dynamin-like proteins unique to plants. A GFPARC5 fusion protein localizes to a ring at the chloroplast division site. Chloroplast import and protease protection assays indicate that the ARC5 ring is positioned on the outer surface of the chloroplast. Facilitates separation of the two daughter chloroplasts. | 0 |
| RefSeq | XP_010687468.1 | dynamin-like protein ARC5 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84N64 | Dynamin-like protein ARC5 OS=Arabidopsis thaliana OX=3702 GN=ARC5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R9P2 | Dynamin-type G domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_091230 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28453 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9459 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033585 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g190220 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25278, Sbi_jg9132 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19462 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011215 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl43036, Sgl43037, Sgl43045, Sgl47857 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000010628, gene:ENSEOMG00000011620 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0013190, CQ.Regalona.r1.8BG0014500 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30278880 |
| Apiaceae | Apium graveolens | 1 | Ag6G02800 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G003070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701354 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.657.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G09233 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G19720.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020106m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g17760.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g051030.2N, BniB07g051060.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0697 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0751 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g00950 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g11520 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.1158 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039866 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31980 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.346, BH05.401, CH05.458 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0383680, gene-QOZ80_5BG0430500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0455830.1 |
| Poaceae | Oryza coarctata | 1 | Oco24G002580 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g07880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G049900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703341 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G012900, Chr27G003000 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G219600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG018760, gene_TRIDC5BG020980 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G114600.1, TraesCS5B02G120600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb408290_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25513, nbis-gene-25514 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24832 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1552, evm.TU.LG22.445 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g02200 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1579 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3664, nbisL1-mrna-3672 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15247 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18967 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.365 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004874 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2795 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21832 |
| Salicaceae | Populus euphratica | 3 | populus_peu04756, populus_peu12903, populus_peu12913 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606401 |
| Solanaceae | Solanum chilense | 1 | SOLCI002599800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002452 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9093 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0738 |