Basic Information
Locus ID:
Sbi_jg25014
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Short Name:
EFTS
Description:
Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000016l | 6552683 | 6557335 | - | Sbi_jg25014 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 110,471.13 Da | 51.58 | 77.76 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14275 | UBA_EF-Ts | 815 | 850 | 3.80567E-17 | - |
| CDD | cd14275 | UBA_EF-Ts | 574 | 610 | 1.86801E-17 | - |
| Pfam | PF00575 | S1 RNA binding domain | 135 | 204 | 1.9E-19 | IPR003029 |
| Pfam | PF00575 | S1 RNA binding domain | 249 | 307 | 8.3E-6 | IPR003029 |
| Pfam | PF00889 | Elongation factor TS | 623 | 765 | 7.5E-30 | IPR014039 |
| Pfam | PF00889 | Elongation factor TS | 863 | 1006 | 6.4E-30 | IPR014039 |
| SUPERFAMILY | SSF46934 | UBA-like | 812 | 863 | 1.82E-17 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 573 | 622 | 2.37E-17 | IPR009060 |
| SUPERFAMILY | SSF54713 | Elongation factor Ts (EF-Ts), dimerisation domain | 865 | 1006 | 5.1E-44 | IPR036402 |
| SUPERFAMILY | SSF54713 | Elongation factor Ts (EF-Ts), dimerisation domain | 624 | 765 | 1.57E-43 | IPR036402 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 127 | 205 | 1.03E-21 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 236 | 326 | 7.55E-11 | IPR012340 |
| Gene3D | G3DSA:1.10.286.20 | - | 679 | 723 | 1.5E-47 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 244 | 325 | 6.2E-11 | - |
| Gene3D | G3DSA:1.10.286.20 | - | 921 | 964 | 6.0E-13 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 122 | 209 | 2.2E-24 | - |
| Gene3D | G3DSA:3.30.479.20 | Elongation factor Ts, dimerisation domain | 627 | 764 | 1.5E-47 | IPR036402 |
| Gene3D | G3DSA:3.30.479.20 | Elongation factor Ts, dimerisation domain | 865 | 1008 | 1.5E-32 | IPR036402 |
| Gene3D | G3DSA:1.10.8.10 | - | 569 | 622 | 1.9E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 810 | 864 | 5.7E-24 | - |
| SMART | SM00316 | S1_6 | 247 | 318 | 2.3E-10 | IPR022967 |
| SMART | SM00316 | S1_6 | 133 | 204 | 8.7E-24 | IPR022967 |
| TIGRFAM | TIGR00116 | tsf: translation elongation factor Ts | 570 | 663 | 5.1E-33 | IPR001816 |
| TIGRFAM | TIGR00116 | tsf: translation elongation factor Ts | 811 | 905 | 1.9E-35 | IPR001816 |
| TIGRFAM | TIGR00116 | tsf: translation elongation factor Ts | 659 | 782 | 5.0E-32 | IPR001816 |
| ProSiteProfiles | PS50126 | S1 domain profile. | 135 | 204 | 23.238438 | IPR003029 |
| ProSiteProfiles | PS50126 | S1 domain profile. | 249 | 318 | 15.858896 | IPR003029 |
| ProSitePatterns | PS01126 | Elongation factor Ts signature 1. | 820 | 835 | - | IPR018101 |
| ProSitePatterns | PS01127 | Elongation factor Ts signature 2. | 643 | 653 | - | IPR018101 |
| ProSitePatterns | PS01126 | Elongation factor Ts signature 1. | 579 | 594 | - | IPR018101 |
| Hamap | MF_00050 | Elongation factor Ts [tsf]. | 811 | 1017 | 36.02877 | IPR001816 |
| Hamap | MF_00050 | Elongation factor Ts [tsf]. | 569 | 782 | 39.920784 | IPR001816 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 524 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 539 | 564 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 226 | - | - |
| Coils | Coil | Coil | 1012 | 1017 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29060.1 | elongation factor Ts family protein. | 0 |
| RefSeq | XP_021741469.1 | uncharacterized protein LOC110707738 isoform X1 [Chenopodium quinoa] | 0 |
| Q9SZD6 | Polyprotein of EF-Ts, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PETs PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QMW4 | Elongation factor Ts, mitochondrial OS=Spinacia oleracea OX=3562 GN=EFTS PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15501, jg33837 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9100 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014585 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g196900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25014, Sbi_jg8868 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19736 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007769, GOSA_00007770 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42256, Sgl47032 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009631, gene:ENSEOMG00000033644 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0019800, CQ.Regalona.r1.8BG0022580 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30256850 |
| Apiaceae | Apium graveolens | 1 | Ag10G01520 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G007630 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702876 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2252.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri4G02403, Ftri8G29592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024316m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g27000.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g083910.2N, BniB05g007220.2N, BniB05g008470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0865 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0995 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02550 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0078s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g16210 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1118 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003868 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G29558, Lb6G30757 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3682, BH05.3703, CH05.3888 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0393080, gene-QOZ80_5BG0441360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0444900.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_001962 |
| Poaceae | Oryza coarctata | 2 | Oco23G007930, Oco24G007530 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g35630.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G089800, gene-BS78_K022400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703772 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G016580, Chr19G009600, Chr27G006830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G182200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG015330, gene_TRIDC5BG016440 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G093200.1, TraesCS5B02G099300.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb078330_P001, Zm00001eb091120_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30276 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25943 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2494, evm.TU.LG10.1532 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g07330 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1927 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25648 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17578 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-10199, nbisL1-mrna-21839, nbisL1-mrna-4696 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1099 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000095 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14783 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1210 |
| Salicaceae | Populus euphratica | 1 | populus_peu21951 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603424 |
| Solanaceae | Solanum chilense | 1 | SOLCI006671800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025533 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_11808, gene_9320 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1437 |
| Zosteraceae | Zostera marina | 1 | Zosma05g02340.v3.1 |