Basic Information
Locus ID:
Sbi_jg25012
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000016l | 6540146 | 6543904 | + | Sbi_jg25012 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 30,389.54 Da | 43.03 | 63.95 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 44 | 272 | 1.6E-74 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 167 | 262 | 9.42E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 165 | 274 | 9.5E-40 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 170 | 263 | 24.027752 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 29 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_021741474.1 | auxin-responsive protein IAA27-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9ZSY8 | Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QSX7 | Auxin-responsive protein OS=Spinacia oleracea OX=3562 GN=SOVF_144580 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology