Basic Information
Locus ID:
Sbi_jg24993
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
proteinaceous RNase P 1, chloroplastic mitochondrial-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000016l | 6252853 | 6256839 | - | Sbi_jg24993 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 104,627.12 Da | 45.12 | 67.86 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16953 | Protein-only RNase P | 600 | 825 | 1.3E-73 | IPR031595 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 290 | 349 | 1.5E-17 | IPR033443 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 411 | 558 | 1.9E-53 | IPR033443 |
| Gene3D | G3DSA:3.40.50.11980 | - | 617 | 791 | 2.0E-196 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 408 | 828 | 2.0E-196 | IPR011990 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 471 | 505 | 8.988323 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 859 | 873 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 877 | 899 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 843 | 902 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_021862317.1 | proteinaceous RNase P 3-like isoform X1 [Spinacia oleracea] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RZA4 | ribonuclease P OS=Spinacia oleracea OX=3562 GN=SOVF_011940 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology