Basic Information
Locus ID:
Sbi_jg24854
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000016l | 3889654 | 3903124 | - | Sbi_jg24854 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 37,334.46 Da | 42.14 | 85.94 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 75 | 126 | 6.95284E-21 | - |
| Pfam | PF12906 | RING-variant domain | 75 | 125 | 3.8E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 72 | 130 | 1.75E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 138 | 1.4E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 74 | 126 | 3.5E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 67 | 132 | 21.502777 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_010688092.1 | uncharacterized protein LOC104902110 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A7C8Z8C0 | RING-CH-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology