Basic Information
Locus ID:
Sbi_jg24684
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000016l | 1440603 | 1447034 | - | Sbi_jg24684 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 37,669.44 Da | 35.02 | 104.58 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 26 | 249 | 4.29437E-99 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 41 | 84 | 2.4E-6 | IPR011545 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 114 | 227 | 1.5E-5 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 181 | 340 | 3.79E-17 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 21 | 241 | 8.16E-34 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 250 | 341 | 8.5E-23 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 4 | 249 | 5.5E-79 | IPR027417 |
| SMART | SM00487 | ultradead3 | 33 | 258 | 1.4E-21 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 113 | 340 | 4.3E-75 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 45 | 242 | 19.625813 | IPR014001 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_048490996.1 | ATP-dependent DNA helicase Q-like 3 isoform X4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8B3Q8 | Helicase ATP-binding domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_004930 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology